G286470


Basic Information

Item Value
gene id G286470
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 4169104 ~ 4175651 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU324691
GTTCCATTCTATTTCTTGTTGTTATTCCAGAAAAACATACTTTATTGATCCCTAGAGGGACATTCAGGCACATAATAGAAGCTGTCTCAAATGTGGATAGCAGAAAAACACCACTATAAATAAATGAAATGCAATCAAACAAGCCAGTGCAAGACAAAACATGAGTACAATGGCATAAATGCATATAAGTATCTGGTAAACAAGATTGTGAAAGTTGCATTCTGAGACACCAAAGAAGTGCTGATGGACTGTTTTGTAGTTTTTTATAGTAAACCGTACAAGACAGAAATAGTTTATGTGTTGCTGCTTTAAAATTTCATCATTATAATTCCGCCCTGAGCATTTTGCATCGTTAAATCTATTTTAAACTCAAAGCTTAGGACATTATTTCGCTATATATTCTGCATATGCTTGACTTTCTTTTTGTTTTAGTCATAATTTAATACTGGTCTCATCTTGTGGGTCATGACCCTAAAATTGCTCGCAGGTCTGTTTTGATACGGTCACGGACAGTGGGGAAATGACCGTTCTAAACACAAATAAACTGAATGGGAAAAAAATCGTATAATTGTGCATGGACCCTTTTCACATCATTTCCACAGTTATTAACGTCATTAATCTAGCCAGTTTTTTTTAATATTTTTATCTTTAAAAAATGTAAAGGTACATTTATGACACTGTTATCTTGGCATTAAATTACAAACAAATTGTTAACACTGCTGCGAGAGTGTATTTTAATACAACGGCTGAGAGAGTAACGTAAATTTGACATCTTTCTCTCTTCTGACTGCCGTAATTAATCTCTCCCTCTCTATTTTTTTTTTTTTATCTTTTGGAAAGGCGTGGAAAAATGTTAATGTATTTTTTTTTTGCTATTGAAACAAATTTATTATAATTATAGATATATTATAAATATAAAGTTTATTGAATTCATTTAGTTTAGTAAATTCAGCTTAAACAATTATTTCCTGTATTTTTACTGTTTATTTTATATGAATTTATGTGAATTATATTTTATTTCTACATTGTCTATATTTCTTTATAAAAATTTCATGCTGATATTCTCATTTAAATATCCCCCTCCCAATTTTCAACAAATTGCACCCTGGTTATCATCAAAGTTTGAGCATCCAATCAAACTGTACTGTATTTTGGTGCAAATTTGTGTCATTTGGTAGAAGCTAGTCAAATTAGGCAGATTCCAACATTGTCAAATTGTGTAACTTGCCCTTATCCTCAAATTCTATATTAAAACTGCATTAAATAGAGTTTCACTTCTTGGGCCTATGCAGTTTATGGTAATTTTAACCATTTGTGTTGGGTCACCACTCAATGAAACTGAAACATAACTAGGCACTCTAAGCTGGTCCAAGTGCCGTTACCATCCAAGACGATAAGGCCATCAGATGTCTTGCAGTATGTAACACGCCTTTGAAAGCTGGATTCATCACTGTCAGAAAGGCAGCGCTGTTCAAATTTAAAATGTCAGCTCATGTAGGAGCGGCATCTTGGCTGTCTGGGCCGTCGCTGACTGACGGGTCGGTGTTGAGGTGGTTGATCTCCAGGCTCTTAGGAGACTCTTTCAGGAGACTCTCAACCTCACGGTACACTGAAGCCTCTCTGTATTTGCGCAGATGCACCAAAACCTCATCCTCTGAGAAAATCCCAGGACTTGGCTTCTGCACTCTTTCCAGCAGAAGACCATCGAGAGCTGCATCCGATGCCAAATATTTCCTCTCAACGTCTGGACTATCAGTTTGTCCCAGTCTGGCGTGCAACAGCTCACTTAGGCCCACCTGTAAAGCCTTAAAGAAGGCCCTTTGGAAAGCAGGAGCAGAGTCTGTCCTCATCTGACCGGTGGAAATGTGTGCAGCACAGTGCATGAGCAGCAGAGAGAGGCCGCCCACCGACTGCAACCTCCGACTGTGAACAAACAGAGTCCTCTCTCCCTCCTCATAATAGAAAGAGTTGCGGAAAGCATTGTTATTGTAGTCGTTGAAAGGAAGACTAGAAGCCAGTTGAAGTGTTACTGCTGGTATCTAGAATGAAGAAATCAAAGCTGTGAATAAACTTAAGGCTATTTGCATGAAACCACTGCACTCAAAATTTGACAAAAGTAAAAGTAAAGACATCTATAATGTTACAAAATATTCTATTTCAAATAAATGCTGTTCTTTTGAACTTTATTAATCAAAGAATTCTGAAAAAAAAAAAAAATCACTGTTTCCACAAAAATATTAAGCAGCACAACAATTTTCAGCATTGATAACAAAAAGAAATGTCACCATATTAAAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGGCTGCTGGAAATTCAGCTTTGCCATCACAGTAATACATTTTAAATGTAAAAAATTTAAAATATATTCAATTAGAAAATAGTTATTTTAAATTGTAATAATATTTCACAATATTACTGTTTTCATTTATTTCTGATCAAA
>TU324692
GTTCCATTCTATTTCTTGTTGTTATTCCAGAAAAACATACTTTATTGATCCCTAGAGGGACATTCAGGCACATAATAGAAGCTGTCTCAAATGTGGATAGCAGAAAAACACCACTATAAATAAATGAAATGCAATCAAACAAGCCAGTGCAAGACAAAACATGAGTACAATGGCATAAATGCATATAAGTATCTGGTAAACAAGATTGTGAAAGTTGCATTCTGAGACACCAAAGAAGTGCTGATGGACTGTTTTGTAGTTTTTTATAGTAAACCGTACAAGACAGAAATAGTTTATGTGTTGCTGCTTTAAAATTTCATCATTATAATTCCGCCCTGAGCATTTTGCATCGTTAAATCTATTTTAAACTCAAAGCTTAGGACATTATTTCGCTATATATTCTGCATATGCTTGACTTTCTTTTTGTTTTAGTCATAATTTAATACTGGTCTCATCTTGTGGGTCATGACCCTAAAATTGCTCGCAGGTCTGTTTTGATACGGTCACGGACAGTGGGGAAATGACCGTTCTAAACACAAATAAACTGAATGGGAAAAAAATCGTATAATTGTGCATGGACCCTTTTCACATCATTTCCACAGTTATTAACGTCATTAATCTAGCCAGTTTTTTTTAATATTTTTATCTTTAAAAAATGTAAAGGTACATTTATGACACTGTTATCTTGGCATTAAATTACAAACAAATTGTTAACACTGCTGCGAGAGTGTATTTTAATACAACGGCTGAGAGAGTAACGTAAATTTGACATCTTTCTCTCTTCTGACTGCCGTAATTAATCTCTCCCTCTCTATTTTTTTTTTTTTATCTTTTGGAAAGGCGTGGAAAAATGTTAATGTATTTTTTTTTTGCTATTGAAACAAATTTATTATAATTATAGATATATTATAAATATAAAGTTTATTGAATTCATTTAGTTTAGTAAATTCAGCTTAAACAATTATTTCCTGTATTTTTACTGTTTATTTTATATGAATTTATGTGAATTATATTTTATTTCTACATTGTCTATATTTCTTTATAAAAATTTCATGCTGATATTCTCATTTAAATATCCCCCTCCCAATTTTCAACAAATTGCACCCTGGTTATCATCAAAGTTTGAGCATCCAATCAAACTGTACTGTATTTTGGTGCAAATTTGTGTCATTTGGTAGAAGCTAGTCAAATTAGGCAGATTCCAACATTGTCAAATTGTGTAACTTGCCCTTATCCTCAAATTCTATATTAAAACTGCATTAAATAGAGTTTCACTTCTTGGGCCTATGCAGTTTATGGTAATTTTAACCATTTGTGTTGGGTCACCACTCAATGAAACTGAAACATAACTAGGCACTCTAAGCTGGTCCAAGTGCCGTTACCATCCAAGACGATAAGGCCATCAGATGTCTTGCAGTATGTAACACGCCTTTGAAAGCTGGATTCATCACTGTCAGAAAGGCAGCGCTGTTCAAATTTAAAATGTCAGCTCATGTAGGAGCGGCATCTTGGCTGTCTGGGCCGTCGCTGACTGACGGGTCGGTGTTGAGGTGGTTGATCTCCAGGCTCTTAGGAGACTCTTTCAGGAGACTCTCAACCTCACGGTACACTGAAGCCTCTCTGTATTTGCGCAGATGCACCAAAACCTCATCCTCTGAGAAAATCCCAGGACTTGGCTTCTGCACTCTTTCCAGCAGAAGACCATCGAGAGCTGCATCCGATGCCAAATATTTCCTCTCAACGTCTGGACTATCAGTTTGTCCCAGTCTGGCGTGCAACAGCTCACTTAGGCCCACCTGTAAAGCCTTAAAGAAGGCCCTTTGGAAAGCAGGAGCAGAGTCTGTCCTCATCTGACCGGTGGAAATGTGTGCAGCACAGTGCATGAGCAGCAGAGAGAGGCCGCCCACCGACTGCAACCTCCGACTGTGAACAAACAGAGTCCTCTCTCCCTCCTCATAATAGAAAGAGTTGCGGAAAGCATTGTTATTGTAGTCGTTGAAAGGAAGACTAGAAGCCAGTTGAAGTGTTACTGCTGGTATCATTTTATGTAAGTGAAGGTGCTGGAGGAGAAACTGTCCATGCTGGTAGAGCAGAAGCTCTCGTGGGTTGAGTGTTTCAGAGCTCACTAGAATCAGCTCCCCCTCGCACTCCCACTGAGCATCCATAAAATCCATGAATGACCGGCCTGCACCTGAGGGCTGGATCTTCAGCATGCCTCTATCTCTGGCACTATCCCTGAGCTGCTGCTCCACTTCCTTCATCAGCTGGAAGAGAGGAGATAACGCTACTAGTCTGGACCAATCTTGTTCTGCAACACCGTAAAAACAAATACAGTACAGGAAAATTATTTAAGATACTTTTTGTTGCTAAATTGCTAAGTGATTGCTAACTTGTTCTGAATGTTTTTTTAGTATCATATTCTACAATATCAATATGCACTTTTCAAGGCCCTGAAAGGTAGTAAAGACATTGTTAAAATAGTACATGTGACTACAGTGGTTCAACCTTAATGTTATGAAGCGAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU324691 False 2476 TUCP 0.35 4 4169104 4172093
TU324692 True 2524 TUCP 0.38 6 4169104 4175651

Neighbor

gene id symbol gene type direction distance location
CI01000072_04095246_04107965 DRD2A, DRD2 coding upstream 60434 4095246 ~ 4108670 (+)
CI01000072_04057264_04059507 NA coding upstream 107753 4057264 ~ 4061351 (+)
CI01000072_03987009_04043360 NA coding upstream 124849 3986806 ~ 4044255 (+)
CI01000072_03903428_03906320 NA coding upstream 262660 3903428 ~ 3906444 (+)
CI01000072_03895667_03895928 NA coding upstream 272716 3895667 ~ 3896388 (+)
CI01000072_04203719_04206013 NA coding downstream 28068 4203719 ~ 4206267 (+)
CI01000072_04218108_04222857 LAYN, LAYNB coding downstream 42457 4218108 ~ 4223278 (+)
CI01000072_04225105_04268007 SIK2B, SIK2 coding downstream 49138 4224789 ~ 4268148 (+)
CI01000072_04329947_04337502 NA coding downstream 153856 4329507 ~ 4338038 (+)
CI01000072_04338747_04342064 SDHD coding downstream 163096 4338719 ~ 4343266 (+)
G286469 NA non-coding upstream 1221 4167506 ~ 4167883 (+)
G286459 NA non-coding upstream 19269 4149569 ~ 4149835 (+)
G286458 NA non-coding upstream 19872 4149028 ~ 4149232 (+)
G286457 NA non-coding upstream 20098 4148793 ~ 4149006 (+)
G286451 NA non-coding upstream 27620 4141284 ~ 4141484 (+)
G286471 NA non-coding downstream 2328 4177979 ~ 4179842 (+)
G286477 NA non-coding downstream 93363 4269014 ~ 4275631 (+)
G286505 NA non-coding downstream 104947 4280598 ~ 4280835 (+)
G286513 NA non-coding downstream 147572 4323223 ~ 4323835 (+)
G285428 NA other upstream 192890 3970257 ~ 3976214 (+)
G284742 NA other upstream 2183964 1981530 ~ 1985140 (+)
CI01000072_00338411_00351144 NA other upstream 3817816 337071 ~ 351288 (+)
CI01000072_04757636_04762507 NA other downstream 584660 4757583 ~ 4762510 (+)
G286564 NA other downstream 626802 4802453 ~ 4802948 (+)
CI01000072_04831647_04834194 NA other downstream 653747 4831557 ~ 4834707 (+)

Expression


Co-expression Network