G287283


Basic Information

Item Value
gene id G287283
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5407650 ~ 5408014 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU325669
CCATCATGCACTTGAATAACCATTAAAACATCACCTTACCTTGAATCTGCCATCAGAGGCTCTCAGAACTGAGTAAACACAGCAGTGCTGCATGAAACGACTGGTTCAACACGAGTGAGGAGAGAGAACCGCTCAGTGAAATAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAAAACAGTGGAGGGAGGGAAAAGGATGAGAGAATGTGAGCGAATCGTGAGGAGAGAGATAGAGAGATGTGTGTAAGAATGCAGGTAGTAGTTGTAGTAGTTGCTATGGCATTGAATATGTTCTGGCTCTCTATGATGGGCTTGTGAGGGGGTGCGGATTATTTCTCAGATGTAAAATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU325669 True 365 lncRNA 0.45 1 5407650 5408014

Neighbor

gene id symbol gene type direction distance location
CI01000072_05396600_05399519 NA coding downstream 7873 5396540 ~ 5399777 (-)
CI01000072_05353426_05366845 NA coding downstream 40703 5352876 ~ 5366947 (-)
CI01000072_05298324_05299101 DHARMA coding downstream 108524 5298211 ~ 5299126 (-)
CI01000072_05277286_05281467 NA coding downstream 125954 5277041 ~ 5281696 (-)
CI01000072_05268621_05275350 NA coding downstream 132007 5268553 ~ 5275643 (-)
G287279 NA non-coding downstream 2663 5404787 ~ 5404987 (-)
G287278 NA non-coding downstream 3031 5404195 ~ 5404619 (-)
G287276 NA non-coding downstream 24651 5382673 ~ 5382999 (-)
G287275 NA non-coding downstream 31552 5375790 ~ 5376098 (-)
G287273 NA non-coding downstream 63095 5344253 ~ 5344555 (-)
G287284 NA non-coding upstream 30 5408044 ~ 5408269 (-)
G287285 NA non-coding upstream 459 5408473 ~ 5408809 (-)
G287295 NA non-coding upstream 18088 5426102 ~ 5426417 (-)
G287296 NA non-coding upstream 18732 5426746 ~ 5427034 (-)
G287301 NA non-coding upstream 41144 5449158 ~ 5449457 (-)
G287264 NA other downstream 25649 5380720 ~ 5382001 (-)
G287021 NA other downstream 1013427 4386145 ~ 4394223 (-)
CI01000072_03972493_03983836 SPA17 other downstream 1431583 3972401 ~ 3983836 (-)
G286005 NA other downstream 2408155 2993769 ~ 2999495 (-)
G285752 NA other downstream 3236992 2168048 ~ 2170658 (-)

Expression


Co-expression Network