RNA id: TU325669


Basic Information

Item Value
RNA id TU325669
length 365
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G287283
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5407650 ~ 5408014 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCATCATGCACTTGAATAACCATTAAAACATCACCTTACCTTGAATCTGCCATCAGAGGCTCTCAGAACTGAGTAAACACAGCAGTGCTGCATGAAACGACTGGTTCAACACGAGTGAGGAGAGAGAACCGCTCAGTGAAATAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAAAACAGTGGAGGGAGGGAAAAGGATGAGAGAATGTGAGCGAATCGTGAGGAGAGAGATAGAGAGATGTGTGTAAGAATGCAGGTAGTAGTTGTAGTAGTTGCTATGGCATTGAATATGTTCTGGCTCTCTATGATGGGCTTGTGAGGGGGTGCGGATTATTTCTCAGATGTAAAATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325665 lncRNA downstream 2663 5404787 ~ 5404987 (-) True G287279
TU325664 lncRNA downstream 3031 5404195 ~ 5404619 (-) True G287278
TU325662 lncRNA downstream 24651 5382673 ~ 5382999 (-) True G287276
TU325661 lncRNA downstream 31552 5375790 ~ 5376098 (-) True G287275
TU325659 lncRNA downstream 63095 5344253 ~ 5344555 (-) True G287273
TU325670 lncRNA upstream 30 5408044 ~ 5408269 (-) True G287284
TU325671 lncRNA upstream 459 5408473 ~ 5408809 (-) True G287285
TU325681 lncRNA upstream 18088 5426102 ~ 5426417 (-) True G287295
TU325682 lncRNA upstream 18732 5426746 ~ 5427034 (-) True G287296
TU325687 lncRNA upstream 41144 5449158 ~ 5449457 (-) True G287301
CI01000072_05396600_05399519.mRNA mRNA downstream 7873 5396540 ~ 5399777 (-) True CI01000072_05396600_05399519
CI01000072_05353426_05366845.mRNA mRNA downstream 40703 5352876 ~ 5366947 (-) True CI01000072_05353426_05366845
CI01000072_05298324_05299101.mRNA mRNA downstream 108524 5298211 ~ 5299126 (-) True CI01000072_05298324_05299101
CI01000072_05277286_05281467.mRNA mRNA downstream 125954 5277041 ~ 5281696 (-) True CI01000072_05277286_05281467
CI01000072_05268621_05275350.mRNA mRNA downstream 132007 5268553 ~ 5275643 (-) True CI01000072_05268621_05275350
TU325650 other downstream 25649 5380720 ~ 5382001 (-) True G287264
TU325381 other downstream 1013427 4386145 ~ 4394223 (-) True G287021
TU324366 other downstream 1431583 3970270 ~ 3976067 (-) False G286205

Expression Profile