RNA id: CI01000072_05268621_05275350.mRNA



Basic Information


Item Value
RNA id CI01000072_05268621_05275350.mRNA
length 1861
RNA type mRNA
GC content 0.45
exon number 9
gene id CI01000072_05268621_05275350
representative True

Chromosome Information


Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5268553 ~ 5275643 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACTCGTCTAATTCTAAGTCTCGAGACCTTTTGCTTGCAGTTTTTTTTTTTAATTCAAAAATGATTCAAACGTCTTTCATTTGATTAAAAAATAACAAGTTCGGCTGCTGCCATGAATGTCAATGTATAGCAAGTCTTCGGTAATCCTCGGCAAACCTCGACAGTCAGTGGAACTTCTCAGGTGCGTGGTTACTTGCGCTGTCTTGCGTTATCAAATTCAACCCAGAAACAAACGTCAGTTTTGGTTACTTTCTTCGAATCGGCTCAAAAGAACAGTCAAGAGAAATTTGAAGGATGGATATGTTGCTGGCATTGAAGACAAATGCAGTGTCTGTTGTCATGACTGTCTTGGTTCTGTTATTGCTGTGGAAGATTCGAGGAAAGAAGAGCAATTTTGGGCGGCTGCCACCAGGACCCGCTCCGAATCTACTGGTGGGAAATTTATTTCAATTTAATGGCAAGGAAGCCTACAAATATTACCAAGAGCTCAGTAAGAAGTATGGCTCTGTTGTCACCATCTGGTTGGCAAACACACCTGTCGTTATCATTTCTGGATATGAAGCCCTAAAGGAAACTATGATTGGTCTTGGTGAGGAATTCAGTGGCAGGGCCGAATATCCCCTGATCATGAAGTCCACTTTGGGATACGGTGTTCTGTCCACCAGCGGACACAGATGGAAGGAGATGCGCAAATTCTCTCTTATGACCCTGAAGAACTTTGGAATGGGCCGCAGGAGCATCGAGGAACGTGTCAGGGAGGAGGCTGAATATCTTGTGGAAATGATTAAAAAATGTGAAGGCTCTGCATTCAGCCCTGCAGACATGCTGTCTAATGCCGTGGCCAATGTGATCTGCAGCATTGTCTTTGGCCATAGGTTTGAATTTGAGGATCCACAGTTTAAGTTTCTCCTCCGGACTGTAAATACTTACTTCGCTATCCTCAGTAGCCCTTTTGGACAGCTCTATAATATATTCCCTAGGTTAGTCAGTCTCCTCCCCGGTAAACACCACCAGCTGTTTAAAGACCTAAAAGAGGCCAGAGAGTACTGCATGCGTGAAGCACAAGCTCGGATGAATAATGTAGATCCCTCGTGCCCACAGGATTTCATTGAGGCCTTTGTGCTAAAAATGAAAGAGGAGAAAGACAAGTCTGACACAGAATATCATTTTGACAACTTGGTTTCTTTAGTATGGAACTTGTTCAGTGCCGGCACAGAAACCACTTCATCCACCATCAGACACGCTTTGCTTCTGATGATGAAGCACCCAGATGTTCAAGAGCGTGTTCAGCGGGAAATTGATGAGGTTGTAGGAAAGGACCGTTGGCCCTCCAGTGAAGACAGACAGAAGCTGCCATATACAGATGCTGTAATTCACGAGGTACAGCGCAGTATGGATCTCGCCCCCATCGCTGTCCCACACAAGATGATGTGCGACACTGAATACAATGGTTATGTCATTCCTAAGGGAACAATTGTTTTTCCTCTACTATCCTCCGTGCTGATTGACCTGAAACTGTGGAAGAACCCAAATTGTTTCGATCCAGAGAACTTCCTGGATGCAGATGGCAGATTCAAGAAGAATGATTCATTTGTTGTATTCGGCGTGGGCAAGCGCGTGTGTCTCGGTGAGGCTCTGGCTCGCACAGAACTCTTTTTCTTCTTCACTTCCCTCCTTCAACACTTCACCTTCAAAGCCATGGTGCCACCAGAAGAGCTCGACACAAAGCCTACAAATTGCAGTTTTGGCCGCATTCCCCGCACATATGAGTGCTATGCCATTCCTAGGATATAGAGGATGTGTCCACAAAATAACAAAGAAAACATACTCTCATTTCATTTTGATGCTTTAATGGAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU325600 lncRNA downstream 88 5268174 ~ 5268465 (-) True G287230
TU325583 lncRNA downstream 100826 5167483 ~ 5167727 (-) True G287213
TU325580 lncRNA downstream 106311 5161859 ~ 5162242 (-) True G287210
TU325576 lncRNA downstream 117064 5150724 ~ 5151489 (-) True G287206
TU325529 lncRNA downstream 127879 5131142 ~ 5140674 (-) True G287161
TU325608 lncRNA upstream 8443 5284086 ~ 5288356 (-) False G287234
TU325606 lncRNA upstream 16614 5292257 ~ 5294759 (-) True G287234
TU325659 lncRNA upstream 68610 5344253 ~ 5344555 (-) True G287273
TU325661 lncRNA upstream 100147 5375790 ~ 5376098 (-) True G287275
TU325662 lncRNA upstream 107030 5382673 ~ 5382999 (-) True G287276
CI01000072_05208841_05218652.mRNA mRNA downstream 49901 5208841 ~ 5218652 (-) True CI01000072_05208841_05218652
CI01000072_05172707_05173819.mRNA mRNA downstream 93888 5172679 ~ 5174665 (-) True CI01000072_05172707_05173819
CI01000072_05158807_05160357.mRNA mRNA downstream 107060 5158277 ~ 5161493 (-) True CI01000072_05158807_05160357
CI01000072_05099789_05108316.mRNA mRNA downstream 158772 5099421 ~ 5109781 (-) True CI01000072_05099789_05108316
CI01000072_05053749_05071797.mRNA mRNA downstream 196756 5053644 ~ 5071797 (-) True CI01000072_05053749_05071797
CI01000072_05277286_05281467.mRNA mRNA upstream 1398 5277041 ~ 5281696 (-) True CI01000072_05277286_05281467
CI01000072_05298324_05299101.mRNA mRNA upstream 22568 5298211 ~ 5299126 (-) True CI01000072_05298324_05299101
CI01000072_05353426_05366845.mRNA mRNA upstream 77233 5352876 ~ 5366947 (-) True CI01000072_05353426_05366845
CI01000072_05396600_05399519.mRNA mRNA upstream 120897 5396540 ~ 5399777 (-) True CI01000072_05396600_05399519
TU325381 other downstream 874330 4386145 ~ 4394223 (-) True G287021
TU324366 other downstream 1292486 3970270 ~ 3976067 (-) False G286205
TU324361 other downstream 1292551 3970270 ~ 3976002 (-) False G286205
TU325650 other upstream 105077 5380720 ~ 5382001 (-) True G287264

Expression Profile