RNA id: CI01000072_05353426_05366845.mRNA


Basic Information

Item Value
RNA id CI01000072_05353426_05366845.mRNA
length 2176
RNA type mRNA
GC content 0.43
exon number 16
gene id CI01000072_05353426_05366845
representative True

Chromosome Information

Item Value
chromosome id CI01000072
NCBI id null
chromosome length 5473029
location 5352876 ~ 5366947 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATACGTCCCCGCCCACCAAGTGACGTCGAACAGGATGTAGATTTGCACAGGGAAGTGTAGCTCGCGCAGAAGTTGTAACGTCAACTGCTTCCTTATAACAATGGCGACCGAGTCTTTGGTATCGATAAGACTTAGAGGAGTACTGATTGCTGTCATTCTTCATTTCGTGTTAATACCACCGCTGACAGCTATATCAGAGCCGGGCAAATGGATCCTGAATGTGAATAATAAAGATGTGGGGAAGCATGGAAAGTTCATATATCTTCCGAAGACAATGTTCAATGATACTTACATTGCAATAAACGGGCGCAGTGTAAATTGCCCTAGTCCTGTAAACTTAACTATATCATGGTATTTGCGGAGTTCTCCTTGCCACGATGAAGTGTTTGGACTTAATTTTGCAGTAGAAAACTATGATTCACTTCAACCGCTGGTGCCATATTTTCAGCAAAAACGGCCTAAATCAGACTTCGTCGTGGCACGAACCTGGGAAGACAGCCCTTATATGTTCATCATCAAAATTGAGGCATTGCCACCTGCCAAAGAAACAGAATGGAGCATACAACGTAAGATTATAACTGGACTTAATAATGAGTTCTACATGGTGATGTGCATCATCTATGTGATTATGGGCGTGCTGTGGTTGGCTCTCTCAGCTTGTTACTGGAGAGACCTGCTGCGGATTCAGTTCTGGATTGGGGGAGTGATCTTTCTGGGCATGATTGAGAAGGCCGTCTTCTATGCCGAGTTCCAAAGCATCCGTTACGAAGGCCAATCAGTTCAAGGTGCAGTGGTGTTTGCAGAGATACTTTCAGCTGTGAAAAGAACCCTGGCTCGAGTGTTGGTCATTATTGCTAGCCTGGGATATGGCATAGTCAAGCCAAGACTAGGAGCATTGCTGCACAGGGTAGTGGGAGTAGGACTGCTCTACCTTATCTTTTCTGTAATAGAGGGCGTCCTGAGAGTCAACACGGAGCACGGTGGTTCAAGCAGGCTGCTTTGTGACATTGTTATGGCCCTCATTGATTCTTGTATTGTGTGTCACATCTTCATTAGCCTGGCCCAGACGATGAAGCTCCTTCGGCTGAGGAGAAACTTGGTCAAGCTGTCCCTGTACCGACACTTCACCAACACACTCATATTCGCTATCATCGCTTCTGTTATATTCATTGTGTGGACAACAAAGACCTTCAAGTTAACCAAGTGCCAATCTTATCCTGCTCGTTATCATTTTCTTATGGAGGCCTTCAGCAAACAACCAGAGGTAAAGCACTTCACCTCTATCCAAGTGTCAAACCCATTTGTAAACTCAGCTAATAGTGGAGACAAGATCGTCAGTCTCTGTCCTTCTGAACCCTTCAGGTATGCCTTCAGTCCGCTGGTGGATGAAGTTAGTGAGGAAGAGGAGGGGGAGCAGCTAATGAATGAAGCCTTCGAGGGTGTGAAAATGAGAGGGATGAAACCAGAGACCAACGGAAGTGCAAAACTCAATAAAGTGGATGAAGATCTCAAATGGGTTGAGGAGAACATTCCCTCATCAATGGCTGATGTCGCACTGCCGCCTCTGCTAGACTCAGACGAGGAGATCATGACCACGAAATTTGAGATGTCCAAAATGGAGTAGATCTATGAAGATGTATGTATTGTATTGTATATAATGTGTGTATGACAATGCACAACTGCTTTATCCCAAAAGATGAGCTTTTCATAAGCAACGTCTGTAAATATGTGGGACGACGAGGGTGATGCACTAAAGGACTTTTTGTTTTATTTTTAATTGCTTGTTTGTATTTATATTTTCACAGATAATATGGTGTAAGAGTTTCTTAAAACAACTGTAAATTGCCTTTGACTGTTTACATATCTACAGTACAAAATGTGATTAAAACACATTAGTTTGTGCATTGTGCTGTTTTACTAAGAGGCTTTTGCACAACAATCCTCTTATTAATCACATAAAGATGGGAAAACATGTCAGATGAAAGCTCTTTTCTGGTTTTCTTTAATTCGTCAGTATGCTTTCATAGATTAAGCGTACCTCTCTGACCTGGTGGTATTTTCAGTAAAAGTGGCCATTAAGTGTCATCTTGCTGGCCTGTGGACCATTAAGCAGATTGCCTTTCAATGGATTTATCTAACGTGAGTTTTTAATGCTCTGTGTCATAGTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU325659 lncRNA downstream 8321 5344253 ~ 5344555 (-) True G287273
TU325606 lncRNA downstream 58117 5292257 ~ 5294759 (-) True G287234
TU325608 lncRNA downstream 64520 5284086 ~ 5288356 (-) False G287234
TU325600 lncRNA downstream 84411 5268174 ~ 5268465 (-) True G287230
TU325583 lncRNA downstream 185149 5167483 ~ 5167727 (-) True G287213
TU325661 lncRNA upstream 8843 5375790 ~ 5376098 (-) True G287275
TU325662 lncRNA upstream 15726 5382673 ~ 5382999 (-) True G287276
TU325664 lncRNA upstream 37248 5404195 ~ 5404619 (-) True G287278
TU325665 lncRNA upstream 37840 5404787 ~ 5404987 (-) True G287279
TU325669 lncRNA upstream 40703 5407650 ~ 5408014 (-) True G287283
CI01000072_05298324_05299101.mRNA mRNA downstream 53750 5298211 ~ 5299126 (-) True CI01000072_05298324_05299101
CI01000072_05277286_05281467.mRNA mRNA downstream 71180 5277041 ~ 5281696 (-) True CI01000072_05277286_05281467
CI01000072_05268621_05275350.mRNA mRNA downstream 77233 5268553 ~ 5275643 (-) True CI01000072_05268621_05275350
CI01000072_05208841_05218652.mRNA mRNA downstream 134224 5208841 ~ 5218652 (-) True CI01000072_05208841_05218652
CI01000072_05172707_05173819.mRNA mRNA downstream 178211 5172679 ~ 5174665 (-) True CI01000072_05172707_05173819
CI01000072_05396600_05399519.mRNA mRNA upstream 29593 5396540 ~ 5399777 (-) True CI01000072_05396600_05399519
TU325381 other downstream 958653 4386145 ~ 4394223 (-) True G287021
TU324366 other downstream 1376809 3970270 ~ 3976067 (-) False G286205
TU324361 other downstream 1376874 3970270 ~ 3976002 (-) False G286205
TU325650 other upstream 13773 5380720 ~ 5382001 (-) True G287264

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00018291 False 2588 mRNA 0.42 21 NC_007126.7 29092527 ~ 29114449 (-)