CI01000077_00339469_00341596 (TPGS1)


Basic Information

Item Value
gene id CI01000077_00339469_00341596
gene name TPGS1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000077
NCBI id null
chromosome length 491615
location 338198 ~ 341664 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000077_00339469_00341596.mRNA
AGATCATTTTAATATTTGCAAATGCAACAATCAAAATGGTGGTTTAAAGAGAGACTCGTCAGTGTGAGATGGCGGAGAAGCGTCGCGCGGGCGCAGTGATGTCGGATTCCGCATCTGCCAAATGTGAGAACGATAGAGAGTTTCTGTCCCAGGCGGGGGTCAGCGCGCTGCTCAGAGGAGCTCTGCTCAAACTGGTCGAGTCCAGGCCGGAGGATCCCGTCGGCTTCCTCGCCGAACACTTCGCTCATCTGTCGTCGGAGGTTGATGACGGAGGATCGGAGCATCAGGCTGTGAGTCGCGCGCTGTGGCACCTGAGTCTGGCTCATCACTCACAGAGATCAGCGTTTAACAGCAACATCCGTGTGGCGTACGAGCTGCTGACTCAGTGCGGTTGGCGTCAGCGCAGTGTCGGAGGCGTCCGCGGGCGTCTGTACACGGAGACGCTCCAGTGCCTGTGCAGTGAGGGCGGTCTCTCCGGCACCACTGCCGCCCCGCTCCTGCGCCGCATCCAGTGCCACGACTACGAGTCCGTGCCCTTCGAGCTCTTCCGGCAGGGCGTGCTGACCTGCTCTGTGTTCGCCGACTACATCCGGAAGTCTCAGTGTTTGTACGCGGCGGTGGCGAGCTCTCCGGACAGACCGGCCGAGAGAACGCTGTGCCAGGCGGTGCTCGCGACCCTCCGGGAGGCGCTGGAGACGGCGGACGGAGTGGACGTGGCGCGGTACCTGGAGGCCAGTGCCAAGATTTCTCCTGCTAAAGTGGCGCAGGCCATGGCGGAGGTTCATCCTGGGAAACAGCAGGACGGTCCCACCATGGACGCGCAGGAGTTTGAAGATGCTGCCGCAGCGCTTTTCATTGCTCGAGTGCGAATGGTGACCTGAGAGGAAAAAATAATGTTCTTCCTCAGTGTTTCTGTCTTGTTTTCCAACACAAATATGTAAACATTTTTAAATCAAGATACATTTACTGGAGAAGCAAAATGGCTGAAGATATTAAAGGGTTTGTTCACCCAAAAATGAAATTTCTGTCATTAATTACTCTCCCTCATGTCGTTCCACACCCATAAGACCTTCATTCATCTTCAGAACACAAAATAAGATATTTTTGATGAAATCCTAGAGGTTTATGATTTGTCTATAGACAGCAATATAATCAACACTTTCAAGGTCCAGAAAGGTACTAAAGACATTGTTAAAACAGTCATGTGACTGCAGTGGTTCAACCTTAATGTTATGAAGAGACGAGAATATTTTTTGTGCGCAAAAACAAAACAAAAATAACGACTTTATTCAACAGTCTCTTCTCTTCTGTGTCAATATCTTTACACAGGTGACGCAGTAAGCACAGTGAAGGCTTCCGTGTTTACGCCCGAATGCCGGCTCAGTTTTGGCCGAAGCTGATCATGTGATCAGCACGACGCATGCGTGTGATGCTGACGCAGGAGCCGGCCAATAATGAGTCGCCGTTCCGACGTAGAACCTGGAAGCACTGGACGTAAACAACGTATGAGAATGACACAGAAGAGAGAGATTGTTGAATAAAGTCATTATTTTTGTGTTGTTTTTGCGCACAAAGTATTCTCGTCTCTTCATAACATTAAGGTTGAACCACTGCAGTCACATGACTGTTTTAATGATGTCTTTAGTACCTTTCTGGACCTTGAAAGTGTTGATTATATTGCTGTCTATGGACAAATCATAAACCTCTAGGATTTCATCAAAAATATCTTAATTTGTGTTCTGAAGATGAATGAAGGTCTTACAGGTGTGGAATGACATGAGAGTGAGTAATTAATGACAGAAATTTCATTTCTGGGTGAACTAACCCTTTAATATCTTCAGTCATTGTGCTTCTCCAGTAAATGTATCTTGATTTAAGAATGTTTAGATATTTGTGCTGGAAAACAAGACAGAAACACTGAGGAAGAACATCATTTTTTTGCAGTGCAGGTGGTTTTTAGTCAGCGGGAGAAACCTTTGCATGGAACGTTTTATTATTATTATTATTATTATTATTATTATTATTATTAAAGAACCAAGCATATTGTACCCTTACATGTCATAGAAAGAAGGTTTACTATATAGATCTGTATAGAGACACTTTTCATCATCCAGTACAATCCACATAATGCAGTTCAAGGTTTTCCAATAAA
>TU328649
AGAATATTTTTTGTGCGCAAAAACAAAACAAAAATAACGACTTTATTCAACAGTCTCTTCTCTTCTGTGTCAATATCTTTACACAGGTGACGCAGTAAGCACAGTGAAGGCTTCCGTGTTTACGCCCGAATGCCGGCTCAGTTTTGGCCGAAGCTGATCATGTGATCAGCACGACGCATGCGTGTGATGCTGACGCAGGAGCCGGCCAATAATGAGTCGCCGTTCCGACGTAGAACCTGGAAGCACTGGACGTAAACAACGTATGAGAATGACACAGAAGAGAGAGATTGTTGAATAAAGTCATTATTTTTGTGTTGTTTTTGCGCACAAAGTATTCTCGTCTCTTCATAACATTAAGGTTGAAC

Function

symbol description
tpgs1 Predicted to enable microtubule binding activity. Predicted to be involved in protein polyglutamylation. Is expressed in female organism. Orthologous to human TPGS1 (tubulin polyglutamylase complex subunit 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000077_00339469_00341596.mRNA False 2152 mRNA 0.46 2 338198 341664
TU328649 True 365 lncRNA 0.43 1 338742 339106

Neighbor

gene id symbol gene type direction distance location
CI01000077_00318546_00321880 SF3A2.S, BRAFLDRAFT_85076, SF3A2 coding downstream 16318 318546 ~ 321880 (-)
CI01000077_00197568_00202190 LINGO3 coding downstream 135028 196805 ~ 203170 (-)
CI01000077_00110274_00114451 NA coding downstream 223747 110073 ~ 114451 (-)
CI01000077_00050048_00063902 NA coding downstream 274296 50048 ~ 63902 (-)
CI01000077_00028798_00030551 MBD3A, MBD3.S, MBD3 coding downstream 307647 28798 ~ 30551 (-)
CI01000077_00343852_00350024 NA coding upstream 1838 343456 ~ 350039 (-)
CI01000077_00373304_00376103 NA coding upstream 31377 373041 ~ 376198 (-)
CI01000077_00385348_00411344 NA coding upstream 42587 384251 ~ 411344 (-)
CI01000077_00412573_00421163 NA coding upstream 70909 412573 ~ 421163 (-)
CI01000077_00440430_00460441 MIDN coding upstream 98026 439690 ~ 460441 (-)
G289784 NA non-coding downstream 4613 332102 ~ 333585 (-)
G289822 NA non-coding downstream 63810 274164 ~ 274388 (-)
G289819 NA non-coding downstream 69175 268785 ~ 269023 (-)
G289809 NA non-coding downstream 82430 230906 ~ 255768 (-)
G289803 NA non-coding downstream 156648 181279 ~ 181550 (-)
G289750 NA non-coding upstream 6624 348288 ~ 375221 (-)
G289757 NA non-coding upstream 65295 406959 ~ 407174 (-)
G289852 NA non-coding upstream 91687 433351 ~ 433587 (-)
G289749 NA non-coding upstream 96247 437911 ~ 439497 (-)
G289775 NA other downstream 232291 102050 ~ 105907 (-)

Expression


Co-expression Network