CI01000077_00197568_00202190 (LINGO3)


Basic Information

Item Value
gene id CI01000077_00197568_00202190
gene name LINGO3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000077
NCBI id null
chromosome length 491615
location 196805 ~ 203170 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000077_00197568_00202190.mRNA
AATGTGTCGTACCTCCTGTTCTGCTGTGATAAAGATCAGTCTGACGTGAAGGAAAGCAGCGCAGTGTTTTCAGAGTTACTTCTTGTGGCGTTTTTCAGCCTGGCGTTAGTGTTATATAACTAACCGAGAGCAATTCATCAACACTCTGTCCTATTATCAGCACTGAGCTGAACATGTGAGGATGATAAACACTGTATTAATATGCACTGTTGGCTTTTCCAGTCAATCGCATCGGTTGTTCTCTTACGTGGAGACAAAAAACTGCTGGCACGTCAAATATTAACCCCTTTTATGTAATCGAGGTTGTGCATAATCATCCACTTTCATTCAGTCAGCGCTCGCAGACTTTCAGACTTTTTTATGGATATTTCAGGGATGATTTTTTAGCCACATCCTCCAGTCTGCTGCGATTACGTGATCAGATTAATGAACGAGTGCAGTGAGATGAGAAATTAGCATGGCATATGCAGGTGTTTCCATGTTTTTAGGTCGGCAATTTATGCACTTCAGGCATACTTAAACATTTCTGAATGTCACTTTCATATTTTATTGTTTAATGCAGTGTTATTTATAGCATATAAAGATGCACAAACACACTTTACATGCAAAATTCTTAGAATGAGATTTGCACAGTGTGAAATGCTAAAATAACAGATCTAGAGTTGAAGACGAAGACAGTAATGTGTTTATTTGTGGTTTTAGTGGATGATGTTATTTGTTAATGAGATTCTGAGGAGGTGAACTTGAGGAGAAGTAAAAAAAAAACACCAGCTGATTCAAACACAAGAAATGTGAATTTGTTTGCAGTTGTTTTGGTTTTTTAGATCAGTAGCATCTATAATAAAAATTGCATTTGTAGTATATGATGTATAGTAAAATAGCTGACCTAATTACCTTCCTCTCTCTCTGTCCTCATTCCCCTCTCTTGCTCCATCTCTGTTGTTCTCCACAGGTGTGTAGAGTGAAGTGGAGGGAGGCTCATGGCTTCCTTATGGGGCCTGGGCCAGATGTGGTGGCTGGGACTGATTCTGGCCCTGATGGCCCCTCCATGCACGGGTTGCCCACCACGCTGTGACTGCGCGGCGCAGCTCCGCTCCGTGTCCTGCCAGCGAAAGCGCTTGTCCGGCGTACCGGAGGGCATCCCGACAGAGACAAAGCTGCTGGATTTAAGCCGGAACCGTTTGCGTTGGGTTGCACCGGGAGATTTGGCTCCGTATCCGCGTCTGGAAGAGGTTGATCTCAGTGAGAATCTCATCACAACAATCGAGCCCAACGCCTTCGCCAGCCTGCAGGCCCTGCGCACGTTGAGACTCAGAGGAAACCAGCTGAAGCTCGTGCCCATGGGAGCGTTTGCGCGACTGGCGAACCTTACCACACTGGACCTGAGTGAGAACAAGATCGTCATCCTGCTGGACTACACCTTCCAGGATCTGCGTAGTCTAAAAAATTTGGAGGTGGGTGACAATGACCTGGTCTACATCTCTCATAAGGCTTTCTCAGGATTGATAGGCCTGGAAGATCTCACCATTGAGAGGTGCAACCTGACTTCCATATCAGGCCAGACCCTTTCCTATTTGCGTAACCTCGTCACCCTCCGACTACGCCACCTTAGCATCTCTGCTCTTGAGGACCAAAACTTCCGCAAGCTATCTGCGCTGAGAGGTCTTGAGATTGACAACTGGCCCTACTTGGAGTACATCTCGCCGCTGAGCTTCCAGGGGCTCAATCTCTCCTGGCTTTTCATCACCAACACCAATATCACCTCTGTGCCGTCCGCATCCTTCCGAAATCTCGCCTACCTGACGCTGAAGGAACTACACATGGTCAGCACCAATCTGCTCACCGTTGAACCTCACGCTTTGGGAGGTTTGCGGCAAATCCGAGTCCTCAATTTGTCCAACAACGACCTAGTCACCCTCGAGGAGAGTTCGTTCCACTCGGTCAACAGCCTGGAGACCCTTCGGGTGGACGGGAACCCATTGTCCTGCGATTGCCGGCTGCTTTGGATCCTGCAGCGCAGACGTACCTTGAACTTTGATGGAAAGATGCCCGTGTGTGCCGGACCGGCGGAGGTTCAGGGATATCTGTTGAGCACCTTCACCGATTCGGCGTTGTTTGATTATTTCACCTGCCAGAAGCCGAAGATCCGGAACCGGAAGCTGCAGCAGGTGACGGCGCACGAGGGCCAGCCGGTATCGTTCCTGTGCCGTGCCGAGGGCGAACCGACACCGGCCATCATCTGGATCTCGCCGCAGCGGAGAAGGATCACTCCGAAATCCAACGGCAGGATTACGGTGCTCCCGGGCGGAACGCTTGAGATCCGTTACGCCCAGGTCACGGACAGCGGCACATACATCTGCATCGCCAGCAACGCGGGCGGCAATGACACCTACTTCGCCACGCTAACCGTAAAAGGCCAACCGGTGGACTCGCCGCTCTTCTCCAACCGCTCCTTATATGCGGTGGACTTCAACGACACCGGGCTCAACAGCACGCGTGTTTTCCTCAAGTTCACGCTGGATTTAACCACCATCCTTGTGTCCACAGCCATGGGCTGCATCACTTTCCTGGGCGTCGTGCTCTTCTGCTTCCTGTTGTTGTTTGTGTGGAGCCGTGGCCGCGGCCAGCGCAAAAATAACTTCACAGTGGAGTATTCCTTCAGGAAGACAGAAGGACCGGCCACCACCGGGGCATCCGGAGGAACGCGCAAGTTCAACATGAAAATGATATGAAACAACGCAGCCAGGGGCCACCTGGGAGACGCATAGACGCCCAACGCTGACACACACAGTGCTGATTCGCAGAAAAATTTTTGTATTTTTATTTCAATTTTTTTATATATATATATACAGTGTACTTAGTATATATCAGTATATTCAATTATATTTATTAAATGTATAATTAAATGTCAATGTTCTAATTTTTTTCTGTTTATATATATATATATATATATATATATATATTCAATATGTCTATTTATTTTATATTATTTTTTATTTCAGTTTTAGTTTAGTTATTTTCAGTTAGTTTTATTATTTTAGAACATCTACTTTAAATGAAAATTAGAAATGTTTTATTTTATTTTTATTAATGTGCTTTTTTATAGTTTTAGTTAACAATAATAACACTATCTACACAAACCAGGTCTTGATATAATCTTGACAACCTTGTTCTCATTGCCTTTGGAAGCACGTCGCTATTTCTATTGCAGCTGATGGTTAAAAATACAGTAACAAATAGTGACTTTTTGCACTTTTAGGAGCAACTTCAATTGGGAAATCTCAGATTTGCATTTGTTAATTTTATTTGCATTTAAGACTTTAATAGGTTTCCTTTAAACAGTTGGATCAGTGACTGATAAACCTGTTTCACTGCTCAGATCTGGTTAACCATGAGCCACAGTGTCGTCCTGGTGCTGAGTTTTATGAAAAGTAATGGCATGTAAATTTGCTCTTTAGAGTTGCTAATTAGCATAGTAATTTAGAGACAAATAAA

Function

symbol description
lingo3 Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000077_00197568_00202190.mRNA True 3495 mRNA 0.45 3 196805 203170

Neighbor

gene id symbol gene type direction distance location
CI01000077_00110274_00114451 NA coding downstream 82354 110073 ~ 114451 (-)
CI01000077_00050048_00063902 NA coding downstream 132903 50048 ~ 63902 (-)
CI01000077_00028798_00030551 MBD3A, MBD3.S, MBD3 coding downstream 166254 28798 ~ 30551 (-)
CI01000077_00011450_00012795 MEX3D coding downstream 184010 11420 ~ 12795 (-)
CI01000077_00318546_00321880 SF3A2.S, BRAFLDRAFT_85076, SF3A2 coding upstream 115376 318546 ~ 321880 (-)
CI01000077_00339469_00341596 TPGS1 coding upstream 135028 338198 ~ 341664 (-)
CI01000077_00343852_00350024 NA coding upstream 140332 343456 ~ 350039 (-)
CI01000077_00373304_00376103 NA coding upstream 169871 373041 ~ 376198 (-)
CI01000077_00385348_00411344 NA coding upstream 181081 384251 ~ 411344 (-)
G289803 NA non-coding downstream 15255 181279 ~ 181550 (-)
G289793 NA non-coding downstream 46891 149635 ~ 149914 (-)
G289773 NA non-coding downstream 100444 96135 ~ 96361 (-)
G289744 NA non-coding downstream 115537 31363 ~ 81268 (-)
G289809 NA non-coding upstream 27736 230906 ~ 255768 (-)
G289819 NA non-coding upstream 65615 268785 ~ 269023 (-)
G289822 NA non-coding upstream 70994 274164 ~ 274388 (-)
G289784 NA non-coding upstream 128932 332102 ~ 333585 (-)
G289775 NA other downstream 90898 102050 ~ 105907 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016987 CABZ01060891.1 coding NC_007113.7 CM002886.2 57609291 ~ 57707039 (-)
bowfin (Amia calva) AMCG00005855 LOC108427150,LOC107696585,LOC108280165,LOC107552683,LOC107724989,LOC107549819,LOC100151059 coding CM030142.1 CM030142.1 11263074 ~ 11266410 (-)