XLOC_016987 (CABZ01060891.1)


Basic Information

Item Value
gene id XLOC_016987
gene name CABZ01060891.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57609291 ~ 57707039 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033159
CAGTGCTGCAAATGTGAGACGCTCCCTGAGTGTGTCAGCGGGGTGAGAGATGAAAAACCAAACAGCAGCGTGAGAAGAGAcggagacacacacatacacacgcacagacagagacagcagcatcagcagcagcagcatcacaGAGAGATCGAGACACCGCCGGTGTGTGTTCTGTCTGTGCACGCGCGCGAGTGTGAGAGTGTGGAGGAAGAGTACTGTGTGTCGCGTTTTGATGCAAGCAATTGagaggtaaacacacacacacacaggcttgaGGACACGTATGGACGCGCTCGTGTGACTTATGGACAGACTGGAGGAAGAGACGGAGTGCCGGGGACGAGCAGAGACGCGCGCGCTCACGGTCAGACAGATGAGGACACACTCCAGACCTGGGAGTGTAGAGTGACACGGCGGGGGCTCATGGCGTCCTCATGGGCCGTGAGTCGTCTCTGTGTGCTGGGTCTGCTCCTGGCGCTGGCGGCTCCTTCATGTTCTGGATGTCCGCCCCGCTGTGACTGCGCCGCTCAGCTGCGCTCTGTGTCCTGCCAGCGGCGGCGTCTATCCGCCGTCCCCGAGGGCGTCCCCACAGAGACCCGCCTGCTGGACCTGAGCCGGAACCGCCTGCGCTGGGTGGCTGCCGGAGACCTGGCCCCGTACCCACGGCTGGAGGAACTGGACCTGAGTGAGAACCTGATCTCCACGCTGGAGCCCAACGCCTTCGCCAACCTGCAGGCCCTGCGCACGCTGAGACTCCGGGCAAACCAGCTCAAACTGGTGCCCATGGGAGCCTTCGCTCGCCTCACCAACCTCACCACACTGGACCTGAGTGAGAACCGGATCGTCATCCTGCTGGACTTCACCTTTCAGGATCTGCGCAGCCTCAAGAACCTGGAGGTTGGAGACAATGATCTGGTCTACATCTCCCACAAGGCGTTCTCAGGTCTGCTGTCTCTTGAGGATCTGACCATGGCGCGGTGTAACCTGACCTCCATCTCGGGCCAGACTCTGTCGTACCTGCGTGGGCTGGTGACCCTCCGCCTGCGCCACCTCAGCATCTCCACCCTGGAGGAGCAGAACTTCCGGAAGCTGACGGCGCTGCGGGGCCTGGAGATCCACGACTGGCCCTTTCTGGAGTTCATCTCCCCGCTCAGCTTCCAGGGACTCAATCTGTCCTGGCTTTTCATCACCAACACCAACATCACATCCGTGCCATCTGCTTCTTTCCGAAATCTGGCTTACCTGACGGCTCTTAACCTGTCCTACAACCCCATCAGCACGCTGGAGTCCTGGGCCTTCAGAGACCTCATCAGGCTGAAGGAGCTGCACATGGTCAGCACTAATCTCCTCACGGTCGAGCCTCACGCTTTGGGAGGTCTGCGTCAGATTCGAGTCTTAAATCTGTCCAATAATGATCTGGTGACGCTGGAGGAGAGCTCCTTCCACTCGGTCAACAGCCTGGAGACGCTGCGTGTGGATGGAAACCCTCTGTCCTGCGACTGCCGCCTGCTGTGGATCCTGCAGCGCAGACGCACACTCAACTTCGACGGGAAGATGCCCGTGTGCGCCGGACCGCCGGAGGTTCAGGGGTATCTGCTGAGCATGTTCACTGATTCGGCACTGTTCGATTATTTCACCTGCCAGAAGCCCAAGATACGCAACCGCAAGATGCAGCAGGTGATGGTGCACGAGGGTCAGCCAGTATCTTTCCTATGTCGAGCCGAGGGCGAACCGACACCAGCCATAATCTGGATTTCTCCTCAACGCAGAAGAATTACGTCCAAATCCAACGGCAGGGTCACGGTCCTCCCAGGTGGAACGCTGGAGATCCGATACGCCCAGCTAACAGACAGCGGCACCTACATCTGCATCGCCAGCAACGCCGGCGGGAACGACACCTACTTCGCCACGCTAACAGTCAAAGGTCAACCGGTGGACGCTGCGATTTTTAGCAACCGATCAATGTACGCGATGGACTTCAACGAAACGGGTCTCAACAGCACGCGCGTGTTTCTCAAATTCACGCTGGATCTGACCACCATCCTGGTGTCCACCGCCATGGGCTGCATCATGTTTTTGGGTGTGGTTCTCTTCTGTTTCCTCCTGCTGTTCGTGTGGAGCCGTGGACGCGGCCAGCGCAAGAATAACTTCACGGTGGAGTACTCCTTCAGGAAGACGGAAGGACCCGCCACCACCGGCAGCTCCGGAGGAACGCGCAAGTTCAACATGAAGATGATATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000067815

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033159 True 2241 mRNA 0.59 5 57609291 57707039

Neighbor

gene id symbol gene type direction distance location
XLOC_016986 NA coding downstream 23094 57581671 ~ 57586197 (-)
XLOC_016985 NA coding downstream 29001 57490867 ~ 57580290 (-)
XLOC_016984 pias4b coding downstream 135300 57447105 ~ 57473991 (-)
XLOC_016982 map2k2b coding downstream 166081 57416844 ~ 57443210 (-)
XLOC_016983 NA coding downstream 174670 57433995 ~ 57434621 (-)
XLOC_016988 NA coding upstream 23297 57730336 ~ 57752904 (-)
XLOC_016989 NA coding upstream 94615 57801654 ~ 57811814 (-)
XLOC_016990 sf3a2 coding upstream 118393 57825432 ~ 57837838 (-)
XLOC_016991 TPGS1 coding upstream 172308 57879347 ~ 57891504 (-)
XLOC_016992 si:dkeyp-68b7.7 coding upstream 185627 57892666 ~ 57918314 (-)
XLOC_016981 NA non-coding downstream 203563 57400996 ~ 57405728 (-)
XLOC_016979 si:ch1073-325m22.2 non-coding downstream 322033 57268781 ~ 57287258 (-)
XLOC_016997 NA non-coding upstream 383282 58090321 ~ 58109574 (-)
XLOC_017001 NA non-coding upstream 505510 58212549 ~ 58213192 (-)
XLOC_017003 AL954696.2 non-coding upstream 565039 58272078 ~ 58340517 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000077_00197568_00202190 LINGO3 coding CI01000077 null 196805 ~ 203170 (-)
bowfin (Amia calva) AMCG00005855 LOC108427150,LOC107696585,LOC108280165,LOC107552683,LOC107724989,LOC107549819,LOC100151059 coding CM030142.1 CM030142.1 11263074 ~ 11266410 (-)