XLOC_016991 (TPGS1)


Basic Information

Item Value
gene id XLOC_016991
gene name TPGS1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57879347 ~ 57891504 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033164
ACACACGCCGGTCAGCTGATCTTCCGCGTCATCACGTGTCTATAGCGACAGCACTGTTTACTTATTCCTCACCGACTCGCATCTGTGTCTGTCTGGAGATGATATTAATCACCGATACGACGTTAATAACGATCTTCTGAAGCGGCGGTGATGTCGGAGAAGCGGCGCGCGGGTGTGCTGGTGTCCGGCTCGAGCTCCAGCAGCGGATGTGAGGCGGATCAGGAGTTCGTGTCGCGGTCCGGGGTGAGCGCGCTGCTGGCCGGGGCGCTGCTCCGTCTGCTGGACTGCCGCTCCGGGGACCCGCTCGGGTTCCTGGCCGAACATTTCGCGCATCTGTCGGCGGAGGCGGAGGAGGGAGGTGCCGAGCAGCGGAGCTTGAGCAGAGCACTGTGGATGCTGAGTCTGCAGCATCACTCGCAgagATCTGCGTTCAACAGCAGCGTGCGGGTGTCGTATGATCTGCTGTCTCAGTGCGGTGCGGGTGTTGGTGGCGTGGGCGGGCGGCTCTACACGGAGACGCTGCAGAGTCTGTGCAGTGAAGGCGGTCTGTCGGCCTCCACTTCCGCTCCGCTGCTGCGCCGCTTACAGTGCCGTGAACACGAGACCGTGCCCTTCGAGCTGTACCGGCAGGCCGTGCTCACCTGCTCCGTGTTCGCAGACTACATCCGCAAGTCCCAGTGTCTGTACGCAGCGGTGGCGAGCGCTCCAGACCGGCCGGCCCAGAGGACACTGTGCTGCGCGGTGCTGGAGACCTTGAAGGAGGCGCTGGAGACCGCAGACGGGCCCGACACCGCACGATACCTGGAGGCTAGTGCTAAGATCTCTCCGGCTAAAGTAGCACAGGCGATGGCAGAGGCTCATTCGCAGACGCGAGACGGAGAAACAATGGATGCGCAGGAGTTTGAGGATGCGGCCGCGGCGCTCTTCATCGCACGGGTTCGAACCGTCACATGACCTGCTGTCTGAGACCTGGAGATCCTCAGATTGAGAGTTTGCCATGCTTACTATTAATTTAACTCGTAACATTACAGTGCACAGATCAAAGATGAACAAAAGAGTGTTTAAAGCTTCAAGTCAATCAATAAAAagagtacacatgaaatcaaaa

Function

symbol description
tpgs1 Predicted to enable microtubule binding activity. Predicted to be involved in protein polyglutamylation. Is expressed in female organism. Orthologous to human TPGS1 (tubulin polyglutamylase complex subunit 1).

GO:

id name namespace
GO:0018095 protein polyglutamylation biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-040718-280 Predicted to enable microtubule binding activity. Predicted to be involved in protein polyglutamylation. Is expressed in female organism. Orthologous to human TPGS1 (tubulin polyglutamylase complex subunit 1).

Ensembl:

ensembl_id ENSDARG00000027547

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033164 True 1108 mRNA 0.59 3 57879347 57891504

Neighbor

gene id symbol gene type direction distance location
XLOC_016990 sf3a2 coding downstream 41509 57825432 ~ 57837838 (-)
XLOC_016989 NA coding downstream 67533 57801654 ~ 57811814 (-)
XLOC_016988 NA coding downstream 126443 57730336 ~ 57752904 (-)
XLOC_016987 CABZ01060891.1 coding downstream 172308 57609291 ~ 57707039 (-)
XLOC_016986 NA coding downstream 293150 57581671 ~ 57586197 (-)
XLOC_016992 si:dkeyp-68b7.7 coding upstream 1162 57892666 ~ 57918314 (-)
XLOC_016993 si:dkeyp-68b7.5 coding upstream 34014 57925518 ~ 57941863 (-)
XLOC_016994 si:dkeyp-68b7.12 coding upstream 61735 57953239 ~ 57991638 (-)
XLOC_016995 nectin4b coding upstream 134992 58026496 ~ 58075414 (-)
XLOC_016996 fcer1gl coding upstream 186158 58077662 ~ 58085444 (-)
XLOC_016985 NA non-coding downstream 299057 57490867 ~ 57580290 (-)
XLOC_016983 NA non-coding downstream 444726 57433995 ~ 57434621 (-)
XLOC_016997 NA non-coding upstream 198817 58090321 ~ 58109574 (-)
XLOC_017001 NA non-coding upstream 321045 58212549 ~ 58213192 (-)
XLOC_017003 AL954696.2 non-coding upstream 380574 58272078 ~ 58340517 (-)
XLOC_017006 NA non-coding upstream 545256 58436760 ~ 58441495 (-)
XLOC_017010 CABZ01081294.1 non-coding upstream 745172 58636676 ~ 58636792 (-)

Expression


Co-expression Network