XLOC_016989


Basic Information

Item Value
gene id XLOC_016989
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57801654 ~ 57811814 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00034010
GTTCATATTTGGCCTTACATTAGATTTCAGTTCCTACATTGAATAACAGTGGTTTATGCATTAGATAACAGACAATTAAGCACAATGGAGCCTTTTCACATTTGCATGTCTCTCAGCAGCAGAAGTGTTCATAGTTGGTGAACTCAGAGCTCAGTGAATGGGAGAGAACACTATTTACAACTACTACTCcaggatggtgttatcaagactttcagaaagaggaaaacaatagtgtgagactgataacagcagCCAGAAGAGTGAATAAcgtcagatttactgtcctgcccccatacacactgcattacacacacCTCACACTAGTGCTCATTCGTTTATTGTCTTTAAtctaattattaaaaactttcaaggatttaagatgctgatgactatGAAGcatgtcttgtgaaaagggttcatTGTCAAATTAGCTCTTAAGCCAGATCATTAAGCCAGACTTGTGATAATGTCTCCACATGCCGTGTATTCGCTGTAAGCCGGAGCTCAGCAGCAGGATGGTTATGGCCACGATCAGGCAGCGGTTGAGTGTCACTCCTTCCCACGGACGCTCCATCTGCATCTGACTGAGGTTCTGGATGGACAGAGCTCTGCGTAAAGATGCTGACAGAACAACAGGGAAACCACAAAACAACAGTGTGACGTACTGGCGCTGGACATCGGGTGTTCACGGGGAATCATTTTCGGCACCTGCTGAACAATTGGAGCTTCCTGCAGGACACACAAGGTTTCTGAGGAGGATTTTCCGGCAGGGGTTTTTTCAGCTCGTCCTCGAACGTCTCGAAGCTGCTTTCGTCCATTGCTCACCTCATAAAGACATAGAAAAGATTGCAggagaatcacacacacacacacaccagaagcACAGAGAGCCGTCCTGCTGCTGGACGTCTCCTTTGACCCCTGTTTGACCCCTGAGCTTACCTGCAGGAGCAGAAGAGCAGAGCTggaggagcagagagagagagcagaggaGTGAGAAGAGCTGCGGTGGGTGGAGGAAACACACACGTACACGTATGCATGCACTCacgccctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaacacacacattgacaTTAAAGAgacactcattctctctctctatctctgtctcactcacacacacacacacacttgtgacAGTCACACACAGGTGCAGAAGTCATGCTGTTACAGGACACTGATAATTCTCAGGCATGAAGAGTGATTTATTTAGG

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00034010 True 1273 lncRNA 0.46 4 57801654 57811814

Neighbor

gene id symbol gene type direction distance location
XLOC_016988 NA coding downstream 48750 57730336 ~ 57752904 (-)
XLOC_016987 CABZ01060891.1 coding downstream 94615 57609291 ~ 57707039 (-)
XLOC_016986 NA coding downstream 215457 57581671 ~ 57586197 (-)
XLOC_016985 NA coding downstream 221364 57490867 ~ 57580290 (-)
XLOC_016984 pias4b coding downstream 327663 57447105 ~ 57473991 (-)
XLOC_016990 sf3a2 coding upstream 13618 57825432 ~ 57837838 (-)
XLOC_016991 TPGS1 coding upstream 67533 57879347 ~ 57891504 (-)
XLOC_016992 si:dkeyp-68b7.7 coding upstream 80852 57892666 ~ 57918314 (-)
XLOC_016993 si:dkeyp-68b7.5 coding upstream 113704 57925518 ~ 57941863 (-)
XLOC_016994 si:dkeyp-68b7.12 coding upstream 141425 57953239 ~ 57991638 (-)
XLOC_016983 NA non-coding downstream 367033 57433995 ~ 57434621 (-)
XLOC_016981 NA non-coding downstream 395926 57400996 ~ 57405728 (-)
XLOC_016997 NA non-coding upstream 278507 58090321 ~ 58109574 (-)
XLOC_017001 NA non-coding upstream 400735 58212549 ~ 58213192 (-)
XLOC_017003 AL954696.2 non-coding upstream 460264 58272078 ~ 58340517 (-)
XLOC_017006 NA non-coding upstream 624946 58436760 ~ 58441495 (-)
XLOC_017010 CABZ01081294.1 non-coding upstream 824862 58636676 ~ 58636792 (-)

Expression


Co-expression Network