XLOC_010765 (syt11b)


Basic Information

Item Value
gene id XLOC_010765
gene name syt11b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 28842414 ~ 28856112 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021059
ATCTCATTCCATCTGCTCAGCATCACACCGGCCTGGACCGCACCACACACGAGCACACCGTCAACCGGAGAGATGTAGCCATGAACCATCCACAGTATATCAGCTAAACGAAGTACCACCGACATCTAGCTTATTGTTTACTCCTTGGCTGTTATCCGCATCGCAGGGCGCCCAACCCTCAAAATGGCTGAGATGACCGAAATCGGCGCGGCGTACGACATGTCTCCAGTGCTGGCAGGGTTTATCGGTGCTGGCGTGTTGGTCGTTGCAGTCTTTGCGTTAATCTACCTGTGGACTTGCTGTCAGAAACATTACAACAGGACCAACTACAAGCTCCATGGCATCCAGTCGGAACACAGCGATCCTCTCACAGACCCTCCGTACAAATTTATCCACATGCTGAAAGGGATGAGCATCTATCCTGATGCACTTACCAACAGCAAGAGAATAATTCGAGTGGCACGTGAAGCCAGAGCTCAAACCTCTGACCGAGTACAAGGCAGCAAGGGCCGCCCAGTGGTGCTGGTGAATATGGATTCGGCAGCAGAAAGTGGCTTGCTTGGGGAAAAGCAGATGAGGCTTGAGGAAAGTGGGCATGAGGTTTCCAGGCTGGAGAGGGAGCTTCCGGTGCGAGCCGATTACTGCTGCTTGGATAGCAGCTCCGCAAGCAGCAGTCAGACGTCCAGCACTACGGTTTCCAGCACTGCTACACCCTTCACCCCTGCCGATGAACCCAGCCGGGGAGACCTCAGCATTGCAATCGACTATAACTTCCCCAAGAAGGCCTTGGTGGTCACCATCCTGGAGGCTCGTGGTTTGCCGGCAGTGGAAGGTCAGACAGGCAGCGCCGACCCCTATGTAAAGATGACCATTCTTCCGGAGAAGAAGCATCGAGTGAAGACTCGAGTTTTGAGGAAGACTCTGGAGCCTGCGTTTGATGAAACCTTCACGTTTTATGGCGTACCGTACAGCTCCTTGTCAGATCTCACGCTGCACTTCTTGGTGTTGAGCTTTGATCGTTTTTCACGAGATGATGTGATTGGTGAGGCTATGGTTCCGCTGGCTGGCGTGGACCCGAGTACAGGACGGGTTCATATTACACAACAGATCACAAAGAGAAACATGCAGtgtgtgagCCATGGAGAGCTGCTGGTTTCTCTTTCCTATCAGCCTGTTTCTCACAGACTCAGTGTGGTGGTGTTAAAAGCAAAACATCTTCCAAAACTGGACATCACTGGCTTGTCTGCAAATCCTTACGTGAAGCTGAATGTGTTCTACGGCCACAAGCGCATTGCCAAGAAGAAAACGCATGTGAAAAAATGCACGCTCAACCCCGTCTTTAACGAATCCTTCATCTATGACGTGCCAGCTGAGTTGCTCCCTGACATCTCTATTGAGTTCCTGGTCATGGACTTTGACCGCACTACTAAAAACCAGGCTTTGGGACGCCTGGTGCTCGGCGCAGACAGCCCATGCCCTTCAGGTGCTGCCCACTGGCAGGAAGTCTGTCAAAACCCACGACGCCAAATATCAAAGTGGCACACGCTCAATTAACATTAGAGCTTCACATTAACACtctctctccacacacacacactcaaaacacagGCACACAGGAAACATttctgaatgagagagagagaaagaattcTGGGAAAAGATGCCTTTGTTACCACCCACAACATGGTAACTGAAATTCAGGAGGATTTGTAAAAAA

Function

symbol description
syt11b Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in several processes, including calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including axon; exocytic vesicle; and synapse. Orthologous to human SYT11 (synaptotagmin 11).

GO:

id name namespace
GO:0071277 cellular response to calcium ion biological_process
GO:0006906 vesicle fusion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0017158 regulation of calcium ion-dependent exocytosis biological_process
GO:0014059 regulation of dopamine secretion biological_process
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0001786 phosphatidylserine binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0030276 clathrin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090601-7 Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in several processes, including calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including axon; exocytic vesicle; and synapse. Orthologous to human SYT11 (synaptotagmin 11).

Ensembl:

ensembl_id ENSDARG00000056105

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021059 True 1717 mRNA 0.51 4 28842414 28856112

Neighbor

gene id symbol gene type direction distance location
XLOC_010764 plin6 coding downstream 5885 28797703 ~ 28836529 (-)
XLOC_010763 dcst1 coding downstream 114651 28711556 ~ 28727763 (-)
XLOC_010762 adam15 coding downstream 132540 28663184 ~ 28709874 (-)
XLOC_010761 abcb4 coding downstream 184073 28629242 ~ 28658341 (-)
XLOC_010760 BX322614.1 coding downstream 224101 28599138 ~ 28618313 (-)
XLOC_010766 si:dkey-222b8.1 coding upstream 5230 28861342 ~ 28878080 (-)
XLOC_010767 NA coding upstream 174570 29030682 ~ 29042101 (-)
XLOC_010768 mef2d coding upstream 216762 29072874 ~ 29194517 (-)
XLOC_010769 CR938717.1 coding upstream 299626 29155738 ~ 29155852 (-)
XLOC_010770 rhbg coding upstream 409684 29265796 ~ 29277164 (-)
XLOC_010626 CR392024.2 misc downstream 7947239 20895112 ~ 20895175 (-)
XLOC_010756 NA non-coding downstream 835478 27977966 ~ 28006936 (-)
XLOC_010752 NA non-coding downstream 1243737 27595562 ~ 27598677 (-)
XLOC_010748 NA non-coding downstream 1468548 27355418 ~ 27373866 (-)
XLOC_010741 BX511010.1 non-coding downstream 2090209 26747753 ~ 26752205 (-)
XLOC_010740 NA non-coding downstream 2110486 26719880 ~ 26731928 (-)
XLOC_010777 BX248517.1 non-coding upstream 659859 29515971 ~ 29530362 (-)
XLOC_010779 NA non-coding upstream 675236 29531348 ~ 29538953 (-)
XLOC_010781 NA non-coding upstream 791102 29647214 ~ 29650725 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_07581095_07587079 SYT11B coding CI01000027 null 7580793 ~ 7587079 (-)