CI01000027_07581095_07587079 (SYT11B)


Basic Information

Item Value
gene id CI01000027_07581095_07587079
gene name SYT11B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7580793 ~ 7587079 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_07581095_07587079.mRNA
ATGGGCCCCAGCCCCATGGTTGAGAACTATGTTGTCAGTGTTTGGGGGTATAAGTATGTCGTGTCTGAGGATATGTCCCCAGTGCTGGCGGGGTTTATCGGTGCTGGTGTGTTGGTTGTTGCAGTCTTTGCGTTAATCTTTTTGTGGACTTGCTGTCAGAAACATTACAACAGGACGAACTACAAGCTCCATGGCATCCAATCGGAACACAGTGACCCTCTCACAGACCCACCGTACAAGTTTATTCACATGCTGAAAGGAATGAGCATCTACCCTGACACACTGACCAACAGCAAGAGGATCATTAGGGTGGCACGTCAGGCAAGGTCCAAGACCACTGATGGGGCTCAAGACAGCAAGGGCCGCCCAGTGGTGCTGGTAGATATGGATTCGGCAGCAGAAAGCGGCCTGCTGGGAGAGAAACAAATGCAGATGAGGCTCGAGGAAAGTGGCCACGAGGTTCCCAGGCTGGAGAGGGAGCTTCCCGTGCGAGCGGATTACTGCTGTCTGGACAGCAGCTCTGCAAGCAGCAGCCAGACCTCCAGTACTACAGTTTCCAGCACGGCTACACCCTTCACCCCTGCCGATGAGCCCAGCCGGGGGGACCTCAGCATTGCAATCGATTATAACTTCCCCAAGAAGGCCTTGGTGGTCACCATCCTAGAAGCTCGGGGGTTACCGGCAGTGGAAGGCCAGACGGGCAGCGCAGACCCGTATGTGAAGATGACCATTCTCCCAGAGAAGAAACATCGCGTTAAGACTCGTGTTCTGAGGAAGACTCTGGAGCCTGCGTTTGATGAGACCTTCACATTTTATGGTGTGCCATACAGCTCCCTGTCGGATCTCACTTTGCACTTCCTGGTGCTGAGCTTTGACCGGTTCTCACGAGATGATGTGATTGGGGAGGCGATGGTTCCGCTGGCAGGTGTGGACCCGAGTACAGGCCGGGTCCATATTACGCAACAGATCACAAAGAGAAGTATGCAGTGTGTAAGCCGTGGAGAGCTGCTGGTCTCTCTGTCTTATCAGCCTGTTTCTCACAGACTCAGCGTGGTGGTGTTAAAAGCAAAACACCTTCCAAAACTGGACATCACTGGGCTGTCTGGAAATCCGTATGTGAAGTTAAACGTGTTCTATGGCCACAAGCGCATTGCCAAAAAGAAAACGCATGTGAAGAAGTGCACGCTCAACCCTGTCTTTAACGAATCCTTCATCTATGACGTACCGGCTGAGTTGCTGCCAGACATCTCTATTGAGTTCCTGGTCATGGACTTTGACCGCACTACTAAAAACCAGGCCTTGGGACGGCTGGTGCTTGGTGCAAACAGCCCCTGCCCCTCGGGTGCCGCCCACTGGCAGGAGGTCTGCCAAAACCCACGGCGCCAAATCTCAAAGTGGCACACACTCAACGAATATTAGAGCTTCACCACGCTCTCTCTCTGTGCACACACTCAAACACAGGCACGCAGGAAACGATTAATAATGAGAGAGTTTTGGGAAAAAGATGCCTTTGTTACCATCACTACATGGGAGGTAACCGATCTTCAGGAGGACTTTAAAAAAAAGACTTAAGCCAACATTTACGTCATTGCTGATGCGATGATGGGCCTCGGAAATGAATCTTTTTAAAAACACAAGTACACTCTTACTTTCTCACTCAGTTGCTCACATACACACACACACACACCGCAAGAACACAAACATACACAATAAATAATAAA

Function

symbol description
syt11b Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in several processes, including calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including axon; exocytic vesicle; and synapse. Orthologous to human SYT11 (synaptotagmin 11).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_07581095_07587079.mRNA True 1721 mRNA 0.51 4 7580793 7587079

Neighbor

gene id symbol gene type direction distance location
CI01000027_07564783_07576342 NA coding downstream 3993 7564592 ~ 7576800 (-)
CI01000027_07520072_07528984 DCST1 coding downstream 51809 7519485 ~ 7528984 (-)
CI01000027_07495449_07517906 ADAM15 coding downstream 62887 7495449 ~ 7517906 (-)
CI01000027_07473568_07489464 ABCB1, ABCB4 coding downstream 91018 7472899 ~ 7489775 (-)
CI01000027_07462193_07463023 NA coding downstream 117578 7461930 ~ 7463215 (-)
CI01000027_07591755_07601032 NA coding upstream 3402 7590481 ~ 7601032 (-)
CI01000027_07665461_07665871 NA coding upstream 78223 7665302 ~ 7665871 (-)
CI01000027_07690842_07692012 NA coding upstream 103559 7690638 ~ 7692012 (-)
CI01000027_07692521_07693509 NA coding upstream 105442 7692521 ~ 7693608 (-)
CI01000027_07709714_07744049 MEF2D coding upstream 121478 7708557 ~ 7744049 (-)
G142307 NA non-coding downstream 37838 7539471 ~ 7542955 (-)
G142289 NA non-coding downstream 113271 7428257 ~ 7467522 (-)
G142320 NA non-coding downstream 127189 7448773 ~ 7453604 (-)
G142254 NA non-coding downstream 195302 7360940 ~ 7385491 (-)
G142248 NA non-coding downstream 226555 7335871 ~ 7354238 (-)
G143304 NA non-coding upstream 188324 7775403 ~ 7775628 (-)
G143334 NA non-coding upstream 206629 7793708 ~ 7798644 (-)
G143341 NA non-coding upstream 217236 7804315 ~ 7804766 (-)
G143371 NA non-coding upstream 357769 7944848 ~ 7945079 (-)
G143372 NA non-coding upstream 359199 7946278 ~ 7946521 (-)
G142299 NA other downstream 140602 7439178 ~ 7440191 (-)
G142209 NA other downstream 422795 7153623 ~ 7157998 (-)
G142203 NA other downstream 437730 7141094 ~ 7143063 (-)
G141638 NA other downstream 784086 6788627 ~ 6796707 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other downstream 2130430 5447424 ~ 5450461 (-)
G143267 NA other upstream 82250 7669329 ~ 7673769 (-)
G143325 NA other upstream 297456 7884535 ~ 7886049 (-)
G144365 NA other upstream 2951701 10538780 ~ 10542148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010765 syt11b coding NC_007127.7 CM002900.2 28842414 ~ 28856112 (-)