CI01000027_07709714_07744049 (MEF2D)


Basic Information

Item Value
gene id CI01000027_07709714_07744049
gene name MEF2D
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7708557 ~ 7744049 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_07709714_07744049.mRNA
TTGTGCTGATAGGTGTAGTCACTCTGACCGGACCAGGCAATTATGTTGCTGGTGTTTATCCTGGTGCTGGTGTGGAGAGAGGGAACATCAGCTCCCTGATTGTTGAGGTGGAGGAGATTCTTTCAGCTAATGGAAAAGGGCTTTTATTTACAGAGATGCAATCACTGTCTGCTAACACTGTCAAGCTCTTAAGTGTGAAATGTGCTCCTTTCCCTTTCTTCTCCCACTCCGAATGCTTTAAGACGTTGAGAAAGAAAGGCTTTAATGGTTGCAACAGTCCAGAGCCAGACGGGGACGATTCGATCGACCAAAGTCCGTTACAGGAGGACAAATTCCGCAAGAGCGAGGAGCTGGACATCCTCTTCAAACGCTACGGAGCTCTGAACAAGAAAGAGCACCGTGATTCGGAGAGCCCGGACCCCGAGGAGCCGTTCTCCCTCACGCCTCGCACAGAGGAGAAGTACAAAAAGATAGACGAGGAGTTTGATAAAATGATGCAGAGCTATAGGCTTTCATCCACAGTGCCACCACCCACTTTCTCCATGCCAGTCACAGTGCCGGTGTCCAATCAGAGCCCTCTGCCATTCAGCAATCCCAGCAGCCTCGTCACCACTTCTTTCGTCACCTCCACTCTCACAGACCCGCGCCTGCTGTCACCACAGCAACCGCAGCTCCAGAGGAACACGGTGTCTCCAGGCCTGCCACAGCGACCTGCAAGTGCAGGTGCCCTTCTGGGAGGTGACCTCAACAATTCAAACGGAGCGTGCCCAAGCCCTGTGGCTGAAGCTCATACTCTGCTCTCCAAGCATGGCTGTAAACACCCTCATGGGACCATGGGGCACGAGATTGTTGAGCTGCACAAGCAAGGGCTCTCGCAATGCGCCAGTACTGCCGAGGTTGGACGCAGTAAGATTCCTGAGAGTTACGGGACAAAAAACTCAAGTGGTAGACCCAAAAAGATTTCACCTGCACTGAGTTGGAGGATCCGACGGGCTGTCTGTGAAGACACAGGCCGATCCTCGCCCCAAATTAAGGCCCTTACTGATGCTGACTGCAGCCCAATAACCATAAGACAGCTTCTGGTTGATGAGAAAGAAAGCAGGTCTTTATTTGTGAATCTCTCTGTTGACATCTCTCTGTCTTTTCTTCATTTTCTTTCTCGTTCTGTAGCCAATGGTTACGTCAGTGCCAGGGCCTCCCCAGGACTCCTCTCAGTCTCCAACGGCAACAGCATGGGGAAAGTAGTCCCGGCTAAATCTCCCCCTCCGCCCAGCACTCAGATGGTGAACAGTCGCAAACCGGACCTACGGGTCATCACCTCCCAGAGCAGCAAGGGCCTCATGCAGCTGACAGATGAAGAGCTGGAGTTGAACGCTCAGCGGTTAGGCGCCTCTCAAGTGACCCAGCCTCTTACCACACCAGTGGTTTCCGTGGCAACGCCGAGCCTCCTGACTCCATTCTCCATGCCAACCGCCTACAACACAGAGTACCAGCTAACAAGTGCAGATCTCACAGCCCTCCAGGCCTTTACGCCATCGGGATGTGAATTAAATGTACAGGGCAGAATAGCTGAATGCCTGCGCTACCTAGTTTCCCTTTATGCATCACATAATAGCCCAAGGCTCAGCATGTGGGGCTCAGACAAACAGAACGGAGAGATGGCTCACTGCATCTCTGGTCTGGCTGCTAATCTCAGTGTGACATCTCAGGGCAGCTTACTCTTGGGCAGGGAGGAAGGGATCAGCTGGCCCGTGGGAACGATCCCTCATGGAGCCACTCTGACGGTTAACACTAACCCCAATGTCAGCATCAAATCCGAGCCAGTGTCTCCTAACCGGGATCGCAGCACCCCTAGTTCAACCGCCGGGGCAGCGGGTGGCATATCGGGTCTGACCGTGACCCAGTATCCAGCGACGCTGCGTTTGGAGCCCACCGGCCGCTCTCCAGGCGACAGCATCAGCAGTAATGGCAGCTCTTATGAGGGAAGCGACAGAGACGACGGTGGGCAGACGCGCCCTCCCGATTTCAACTCGGCCGGCCTGGGTCTCCTCCGAGCTTCCGGAGAGCAACAGTCACAAGCGGAGCAGCAGGAGTCAGCCAATGTGAAACGCATGAGACTGGACACCTGGGTCACATAAACGCTGAAGGAGAGAGCGAGGGAGCTGCTCTCTCACCCGCACATACACACACACCGACATAAACACACCCCTAGTGGCACCTGCTTTCAGCAGCCAATCTCAGTCCGCACTTAGACACATGCATGCGCCTGTCTCTCTGTCTCTTTCTTTCTGTCTCTCTCACTCTTGTCTCACTTTCAGACACACTCATATTTACTGGTGTGTGTATATATTTATATAAAATATGCATATATGATCACACACGCACTAGATCTTCACACACACAGTTGCCAATCCAGGTGTAAACGTGTTCACGTATACGAGACTGAAGAGATGTACAAGGCGGAAGGGCTTTTGGTCGCATCTCTGATATCCCTCGCTCCTGCTCAGAGAGGCCGTCCGGATCTCAGATCAACTTTTACAGGCCTTACCGTCGACCTGATCAGAGTTCAGCGGCACTGCTCTGTCAAAACAGCATAACAACTGCTTGTTATGTTGCATAGACAAGCCTGTCAATCTCTTTTTTGTATCTATTTCTCTTTTGTTTTGTTTTGTTTTTGTATGAATGGTTGCATTTGCCATTTTTCTTCTCGACTGACTCTTTCCCTCTTGCTTTTCCTGTTTTTTTTGACTATCTGCTTGAGCAGCTGCCTTTAGAATCGCCCCCGTTCCTTTTGTAACAACTTTAACGTAGAATCTTTATCTTTGTTTTTCTAACTGTGCAAAAACTAGCATAGTGTGTTTGTGTGTCAGTTGTGAGACGGAGGTGCTCATTCATTCAATCGCTAAACACAATTCAGCCAAAAAACAACTCGATCATATTCGTTCACCATCTTTCGTTGTAACAATTCGTAACCTCGCACCAGTCCCCTCGCTAGATGCGTGTGTCTATCGGCGGAGCTCGAAGCACGCCGCTCCGCATCCTCAATTTTCTGCGTACGCGTGGACCGTAAACATAGTGTCGTTGATTGAAATGTACTAATGAGATCCAGGCGTGCAGGAAACACAGACATGTTCGTATCAGCCTGCAGTGTGTGGCTGCGTTTACGAGAGCAGCGGTCTGCCACATTATGCTATATTTATTGTTTTTGTCTGGCTGTGTAATTCAGAGATTAATTAGTTAACTTTATGGGACGGGTATGCTTAATTATTGTTTGTAAGATTCCATGAAAAATAAA

Function

symbol description
mef2d Enables transcription cis-regulatory region binding activity. Acts upstream of or within heart formation; positive regulation of transcription by RNA polymerase II; and skeletal muscle myosin thick filament assembly. Predicted to be located in nucleus. Is expressed in several structures, including adaxial cell; brain; fast muscle myoblast; musculature system; and primitive olfactory epithelium. Orthologous to human MEF2D (myocyte enhancer factor 2D).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_07709714_07744049.mRNA True 3295 mRNA 0.51 16 7708557 7744049

Neighbor

gene id symbol gene type direction distance location
CI01000027_07692521_07693509 NA coding downstream 14949 7692521 ~ 7693608 (-)
CI01000027_07690842_07692012 NA coding downstream 16545 7690638 ~ 7692012 (-)
CI01000027_07665461_07665871 NA coding downstream 42686 7665302 ~ 7665871 (-)
CI01000027_07591755_07601032 NA coding downstream 107525 7590481 ~ 7601032 (-)
CI01000027_07581095_07587079 SYT11B coding downstream 121478 7580793 ~ 7587079 (-)
CI01000027_07821062_07827997 RHBG coding upstream 77013 7821062 ~ 7828092 (-)
CI01000027_07850115_07861432 BCAN coding upstream 105654 7849703 ~ 7861432 (-)
CI01000027_07876459_07878548 NA coding upstream 131444 7875493 ~ 7878548 (-)
CI01000027_07888504_07893711 TLR18 coding upstream 144455 7888504 ~ 7893711 (-)
CI01000027_07904624_07919811 NA coding upstream 160575 7904624 ~ 7919811 (-)
G142307 NA non-coding downstream 165602 7539471 ~ 7542955 (-)
G142289 NA non-coding downstream 241035 7428257 ~ 7467522 (-)
G142320 NA non-coding downstream 254953 7448773 ~ 7453604 (-)
G142254 NA non-coding downstream 323066 7360940 ~ 7385491 (-)
G142248 NA non-coding downstream 354319 7335871 ~ 7354238 (-)
G143304 NA non-coding upstream 31354 7775403 ~ 7775628 (-)
G143334 NA non-coding upstream 49659 7793708 ~ 7798644 (-)
G143341 NA non-coding upstream 60266 7804315 ~ 7804766 (-)
G143371 NA non-coding upstream 200799 7944848 ~ 7945079 (-)
G143372 NA non-coding upstream 202229 7946278 ~ 7946521 (-)
G143267 NA other downstream 34788 7669329 ~ 7673769 (-)
G142299 NA other downstream 268366 7439178 ~ 7440191 (-)
G142209 NA other downstream 550559 7153623 ~ 7157998 (-)
G142203 NA other downstream 565494 7141094 ~ 7143063 (-)
G141638 NA other downstream 911850 6788627 ~ 6796707 (-)
G143325 NA other upstream 140486 7884535 ~ 7886049 (-)
G144365 NA other upstream 2794731 10538780 ~ 10542148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00012495 NA coding CM030138.1 CM030138.1 19763003 ~ 19787642 (+)