CI01000027_07591755_07601032


Basic Information

Item Value
gene id CI01000027_07591755_07601032
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7590481 ~ 7601032 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_07591755_07601032.mRNA
GGAGGAGAGAATGAGAGCTTCGCCAAACGTGCCATTGAAAGCCTGGTAAAGAAACTCAAAGAGAAAAGAGATGAGCTTGACTCCCTCATCACCGCTATCACCACAAATGGAGTCCATCCAAGCAAGTGCGTCACCATACAGAGAACGCTGGACGGACGTTTGCAGACCAAAAGTCTGGCAGACTTTCACCTCTGTGGCATTTATAACCATCAGAGGAGGAGAATCGAGGTGGCTGGGCGGAAGGGTTTCCCTCATGTCATATATGCTCGTCTGTGGCGATGGCCAGACCTCCACAAGAATGAACTCAAGCATGTCAAGTTCTGTCAGTATGCGTTCGATCTGAAGTACGATAACGTGTGTGTGAACCCCTACCACTATGAGCGTGTGGTGTCCCCTGGGATTGTGGGATTCAGTTTACCAAACACAGGCAGGCTGATAAAAGAAGAGCACATACATGACTGCATCCAGATGGAGGGTCCGTCGAGTATGACCTTACAGCAAGACCATCATCCTCCAGATCACTACAGCCCACAGCCGCTGAGACTGATGTCCCCAGAGCCTCCCCAGCGGACCACTTCCTCGGTCACTCTCTACCCCAGCCTGCCCCTCTCTCCACCCTCGAGTGCTTCCAGGTTGTCCATGCAGGTGGAACGCCCTGAAGGACTGTTGCAGATCGCCTCCCCAGCGGGACGAGCCTTGACCTCCAGCTCTCCACCTTCCACCCCAACACACAGTCACGCACCCACACACAGCCAGCCCTCATCCCAGCAGCCCTCTGTTAGTCAGAGTGAATACAACACCTCCAAACACACACAGACACAGGGCTCTTACCACAGACCAGAGTTCTGGTGCTCAGTCTCTTATTTCGAGATGGACGTGCAGGTCGGGGAGATGTTTAAGGTTCTAGCAAACTGTCCTGTGGTGACGGTAGATGGATATGTGGACCCTTCGGGCGGGGACCGCTTTTGCTTGGGTCAGCTTAGCAATGTTCACCGAACTGATGCCAGTGAGAGGGCAAGGCTTCACATTGGTAAAGGTGTTCAGCTGGAGTGTCGTGGGGAGGGGGACGTGTGGATGCGTTGCCTTAGTGACCATGCTGTCTTCGTGCAAAGTTACTACCTGGACAGGGAGGCAGGGAGAGCGCCAGGGGATGCTGTTCACAAGATCTACCCAGGAGCCCTCATTAAGGTGTTTGATCTTCGTCAGTGTCACAGACAGATGCAGCAGCAAGCTGCGACTGCGCAGGCAGCTGCAGCTGCGCAGGCTGCAGCGGTAGCTGGGAACATCCCTGGGCCTGGCAGTGTTGGAGGAATTGCTCCAGCCATCAGTCTGTCGGCTGCAGCTGGAATAGGTGTTGATGACCTGCGTCGTTTGTGTATCTTGCGTCTGAGTTTTGTAAAGGGTTGGGGACCTGACTACCCTCGACAGACCATCAAGCAAACACCATGCTGGGTGGAAGTTCATCTACACCGTGCCTTGCAGCTGCTGGATGAGGTCCTGCACACCATGCCCCTCGCTGATCCTGGACCTGCCAACTGACCCACAGACTGCAAAATATACAAGTCCTGTCACAAAAACAGGGAAGACGAAAGACAGAGAAACAGAGAGACACACACACCTGCACAGGCAAACAGTGACTCATAGTACCACATACACGTATAAGCCGTCATGCCTTCACACACACACACAGTCTTTCCACAGGCTTTTCCTTGGCCAGCAAAGTGCCTCTGAACTGACCAGTGTTTAGTCCACTCTTGGGTGCTGTTGACTCGGTTGTCATGGTAACACAGACCAAAGGCCCCACTGATGAGTTCACACTAATGGAGGTCCAAAAGAGGTGGAAGTATTGAAGAGGGAGAGAAAGATCCATATAGCTGAAAATATTATGACGCAGTTAATATACTTTAAGGGATAGTTCACCCAAAAATGAAAATTCTGTCATCATTTACTCAGGTTCAGAAATCTCAGATTTCATTTAAAATATCTTCATTTTTGTTTTGAAGATTTAGAACGACATGAGGGTGAGTAATTGATGACAATTTTTTCATTTTTGAAAATCCTCAGAGACCAAAAAATTGAAATTTATATTTTTTACCCTTTAACATGTCTTTAGGATGCCATTAGTTATAAAACCATTTATTATGGCAAAATTACATTGGAGTTTAATTTGAAAAATTGCAGCGCTCGGCATTTAGGGTTGCAAAAATTTACTACTATTTTTCAAAACACTAAGTGAATGTTTTGAATTCACAACAGTTCATAACTAATATATTTCAAAAATAATATATTAGTAAGGACACAGTCATGAAAAATTAAGAAATGTCAATATTTGATCATTTTAATACTGTAAATATTCATATCAAAGCAAATTTTAAATGTAACGTATTAATTTTAATACCACTTAATTAAACATTTTATATATAGAATATAACGATGAAACAGCTAAAAATTTTTAAATATTTTTGTACCATTCATTAGCCTTCATTGTGTGAGAACAATAGAAAAATGTTTCATCCCTAATGCCCTGTGTTGCATTTTTGCCACTCTTCAAAAATTGCCACTCTGAAATTTATCAATTTCTGAGTGTCATCTATTCTACTGTTACGTCACGTGTAGTTTTTTTCCCACATTTACTAAAAATTAGGTATTATTTACTTGCTTTATACAAACATTGCAATTCTGCTACACTAGGTCTTCATGGGTAAAGCTCTGACTTAAACTGATTTATCATAGTTCTTAAAGTGGCAGCTGATCTGAATTCTGAGTGCAAGCAGGAAGTCCATGAACAAATGCATTTAAAACCAGCTAATAAA

Function

NR:

description
Smad4b, partial

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K04501 SMAD4; mothers against decapentaplegic homolog 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_07591755_07601032.mRNA True 2813 mRNA 0.45 10 7590481 7601032

Neighbor

gene id symbol gene type direction distance location
CI01000027_07581095_07587079 SYT11B coding downstream 3402 7580793 ~ 7587079 (-)
CI01000027_07564783_07576342 NA coding downstream 13681 7564592 ~ 7576800 (-)
CI01000027_07520072_07528984 DCST1 coding downstream 61497 7519485 ~ 7528984 (-)
CI01000027_07495449_07517906 ADAM15 coding downstream 72575 7495449 ~ 7517906 (-)
CI01000027_07473568_07489464 ABCB1, ABCB4 coding downstream 100706 7472899 ~ 7489775 (-)
CI01000027_07665461_07665871 NA coding upstream 64270 7665302 ~ 7665871 (-)
CI01000027_07690842_07692012 NA coding upstream 89606 7690638 ~ 7692012 (-)
CI01000027_07692521_07693509 NA coding upstream 91489 7692521 ~ 7693608 (-)
CI01000027_07709714_07744049 MEF2D coding upstream 107525 7708557 ~ 7744049 (-)
CI01000027_07821062_07827997 RHBG coding upstream 220030 7821062 ~ 7828092 (-)
G142307 NA non-coding downstream 47526 7539471 ~ 7542955 (-)
G142289 NA non-coding downstream 122959 7428257 ~ 7467522 (-)
G142320 NA non-coding downstream 136877 7448773 ~ 7453604 (-)
G142254 NA non-coding downstream 204990 7360940 ~ 7385491 (-)
G142248 NA non-coding downstream 236243 7335871 ~ 7354238 (-)
G143304 NA non-coding upstream 174371 7775403 ~ 7775628 (-)
G143334 NA non-coding upstream 192676 7793708 ~ 7798644 (-)
G143341 NA non-coding upstream 203283 7804315 ~ 7804766 (-)
G143371 NA non-coding upstream 343816 7944848 ~ 7945079 (-)
G143372 NA non-coding upstream 345246 7946278 ~ 7946521 (-)
G142299 NA other downstream 150290 7439178 ~ 7440191 (-)
G142209 NA other downstream 432483 7153623 ~ 7157998 (-)
G142203 NA other downstream 447418 7141094 ~ 7143063 (-)
G141638 NA other downstream 793774 6788627 ~ 6796707 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other downstream 2140118 5447424 ~ 5450461 (-)
G143267 NA other upstream 68297 7669329 ~ 7673769 (-)
G143325 NA other upstream 283503 7884535 ~ 7886049 (-)
G144365 NA other upstream 2937748 10538780 ~ 10542148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location