G143325


Basic Information

Item Value
gene id G143325
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7884535 ~ 7886049 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU162851
ATCATTACACGTGGGGGCTGCGGATGGAAGAGGCTCCGCCTACTTGGCTAATTCCCCCGCACAGGTGAATGGACGCTATTTAATGAATGAGCACTAGTAACATCTTTTCAAGCGCTAGTTACCAGTTCTTTTTTGTCAAGAGTATTTTGTAAAACAACTGCGACATGGTTTCGAAACTGGAAAATGCAATGGAAGGCCTCATTAAAGTCTTCCACACATACTCTTCCAAGGAAGGAGACAAGTACAAGCTAAGCAAATCTGAGCTCAAGAGCTTGCTTCAGGGAGAACTCAGTGACTTTTTAGCAGCGAGTAAAGACCCCATGGTTGTGGAGAAGATCATGTCTGATTTGGATGAGAACCGGGATGGAGAGGTGGACTTTCAGGAGTTTGTTGTGCTAGTGGCTGCTCTCACAGTGGCATGTAATGAGTTCTTTGTAGAGAGCATGAAGAATTAAATGATCTTCCATGACTCTCTTCAGCTGCATTTTGTAAGTGTTATCAAAAAATAAATACTAGTGACATGCAGACTAATACGTGTATGTGTATGGACGCAAAATTGTGTAGAAGATGCAATGTTTTATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU162851 True 582 TUCP 0.42 3 7884535 7886049

Neighbor

gene id symbol gene type direction distance location
CI01000027_07876459_07878548 NA coding downstream 5987 7875493 ~ 7878548 (-)
CI01000027_07850115_07861432 BCAN coding downstream 23103 7849703 ~ 7861432 (-)
CI01000027_07821062_07827997 RHBG coding downstream 56443 7821062 ~ 7828092 (-)
CI01000027_07709714_07744049 MEF2D coding downstream 140486 7708557 ~ 7744049 (-)
CI01000027_07692521_07693509 NA coding downstream 190927 7692521 ~ 7693608 (-)
CI01000027_07888504_07893711 TLR18 coding upstream 2455 7888504 ~ 7893711 (-)
CI01000027_07904624_07919811 NA coding upstream 18575 7904624 ~ 7919811 (-)
CI01000027_07924688_07926502 LINGO4B coding upstream 38081 7924130 ~ 7926502 (-)
CI01000027_07993673_08002214 ONECUTL coding upstream 107286 7993335 ~ 8006263 (-)
CI01000027_08016916_08025375 NA coding upstream 130480 8016529 ~ 8025455 (-)
G143341 NA non-coding downstream 79769 7804315 ~ 7804766 (-)
G143334 NA non-coding downstream 85891 7793708 ~ 7798644 (-)
G143304 NA non-coding downstream 108907 7775403 ~ 7775628 (-)
G142307 NA non-coding downstream 341580 7539471 ~ 7542955 (-)
G142289 NA non-coding downstream 417013 7428257 ~ 7467522 (-)
G143371 NA non-coding upstream 58799 7944848 ~ 7945079 (-)
G143372 NA non-coding upstream 60229 7946278 ~ 7946521 (-)
G143316 NA non-coding upstream 64655 7950704 ~ 7985293 (-)
G143320 NA non-coding upstream 70019 7956068 ~ 7964780 (-)
G143267 NA other downstream 210766 7669329 ~ 7673769 (-)
G142299 NA other downstream 444344 7439178 ~ 7440191 (-)
G142209 NA other downstream 726537 7153623 ~ 7157998 (-)
G142203 NA other downstream 741472 7141094 ~ 7143063 (-)
G141638 NA other downstream 1087828 6788627 ~ 6796707 (-)
G144365 NA other upstream 2652731 10538780 ~ 10542148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010773 s100a1 coding NC_007127.7 CM002900.2 29385565 ~ 29387215 (-)