CI01000027_07993673_08002214 (ONECUTL)


Basic Information

Item Value
gene id CI01000027_07993673_08002214
gene name ONECUTL
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7993335 ~ 8006263 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_07993673_08002214.mRNA
AGGCTCTATATGATAACGCCAAAGCGCTGCAATAAGAGGGCAAACAGATAAACCTGAATGGAGATAAAAAGCTAGATTTAGCAAATTATACTTATGCGTAACTCTTTTTAAAAAACAATATTATTTAAATAATTTTTGCATGGTAACTGCTATAAGGCTACAAATATAAACACTGACTTCTCTCCAATTTTCAATGAAATGTTTATGTAAATATTTCTTATGTTAGGCTATGAAGCTGTCGTGTTTCAACAAATGAGTATGTATTGCGCTTTATATGTCTTTTCACAAAATAAATGAACAAAAAAAAAATCTAATATTCTGACACAAAGGTTTGACAGCAACACAAACAAGACAGTTTGTAAATGTGATCAATAGCATTTATCTCCATGAGATTTATCAGGAGGCCGAAAATCCTCTACCTCGTAATGCATATTAGTTACATTTTGTTTGTTGCATTGAATTGTAAAATTATTCCATAGAAACAATACAAATATTATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATCATCATTACATTTACAGTATTTGCTTTCGTAAGTCTTTCTGCAAAAAGTGTGGTTCTGTCGCATGTCTATCGTTTAANNNNNNNNNNNNNNNNNNNNNNTTTTACGCATTTAGGCCACTACATGAAATACATTTAGCCTAAATGATATGAGCTAATTAACACCGTCTCTACAGCGTCTCAAAGACAATACAGTAACATAATGATGTGAAGGGGTTAAACTCTGCAATAAGTTTCTAAGAACGCACACTGTTAGTATCTGTCTGCTTAGCTCTGTACGTTTAGCCTCATGTACGTGTTAACCTGCAGGCCTCTTGATAAACACTCGGGAGGAGGACGTGGCTGGACCAAAGGCTCAAAGAACTCAATAGACAGGTATAAATAATTTACTAACTCGCTGGCCGCTGTTTTGATTTCCACGGTTTGTTTTGAACAATGTTTGATCATTGATACGTGTCCCAGACAGAGAAAGGGAAAGAATAGGTGAATAATAATTTGCAGTGCCTTACATGTTGCCAAACTTGTAGCTCTCAGATAAGCTCATGCAAAATCTTAGAGTGCTACATATTATATTAAAATAATATTAATAATAATCCTTCTTGATGTCCCGGAAAAAGAATGTATAGAGGAAATGTCACTGTAACACAATGATGAGAATACTGATGACTATTGACTTTTTTTTTTTTTAATCTATATTATTATTATTTTCTTTTCTTTTTTTTTTTTCTTTTTTCTTTTTTTTTTTTTGCCCTTGGTGTTGTTGCATATGCGCGAGTTTACTGACAGAATTTAATTTCCTTTAACCCTCACGCTATGCTGTATTTTCTAGATGGCCCAAAAATGCACAACATTATTAAAAGGTTTAAGGGAAAATCTTTTTTTACAATTTACATTACAAATTATGAAGGGTGTAAAGGGTTATCAATGCACTCTGGATCAGATTGTTTTTATTCGAGGGTTCTATCTTCTATCGAGCTCTCCAGCCGCAGTCGCGTGTTTTAGGAAAGGTCGCGTGTACTCTCAGAAAGAGGGTCATAGGTGTATAGAATTCCCCATCCCATTATCAGCTTTTGATTGTGTTTTGGAGAGGCTGATTCGCTTCTCTTCATCCAGTCGGATAAGCTACGTTGTGAGCATTGGTCACCAAGGCAAAAGCAAGACTCACATGGATAAATACAGTAACCACACACTAGACTGTTTGTTAGAAAAACACATCAGCTGGAATTTAAAGAAGAAACGGAGTAAGGAAGGTAACGACATGGATGGTAATATGGGTGAGATGTCCGTGCACAGCCACGTAGAGCTGGCGCACAGTCAGGACAGCCGAGCTATGTTGCACTCTCGCGATCTCACGGCTGCTTTCCCTCGTCCCTCTCTGGGAGGCCCCGCCATGGGCCTGGAGTCCGACCACCAGAGCTCCGCGTACGACCACAGCATGGCAAGTCTGGGGTATGGCAGGGATGTACCCACCAGCTGTGGTAGCACCTACACCACACTAACACCCCTCCAACCCTTTGATGACAAATTCCACCATCATCACCACCACCATCCCTGCCTGCCCGTCAGCAACGTCATCGGCAGCTTCACTCTCATGCGAGAAGATCGAGGTCTAGGAGGAAACTACTACGCATCATACGGAAAAGACTTTGGTTTGGGACAGGGTCTGTCTCCACCTCTGGGCAGTGCGGGCCTGGAGACCGCCATGCATGGCTATGGTAGCCTGGGAAGTCAGAATGGACACAGTAGCCAGATGCTTCCAGGTGGCCATGAGGTCCATATGGGCAGCAATGGGGGTAACATCTGTCGAACACCGCCAGACTTTGTGAGGGAGATGTCACCACCCTCTTTGGGTGGCGAGCATGGGGTCAGCCACCAGCTAAACAAAATGGATGCCCATCAGCACACTCCCACCTACCACCCCCATATATATAACCAGAGTTATCAGCACCACCTCTCCAGCCAACAGGCCTCCAAGCTTGGGGAGCTCCCTTCTTCTTCCCCTTCCTCCACCGGCTCCAGCCTGGGAAGAGAGGGCATGCTGGCTGGCTCACAGAATGGCGGCGGAGGGGAGGAGATCAACACTAAAGATGTGGCTCAGAGAATCATCACTGAACTGAAGAGGTACAGCATCCCACAGGCCATTTTTGCAGAGCGGGTTCTGTGCAGGTCTCAGGGCACTCTGTCAGACCTGCTCAGGAACCCCAAACCTTGGGGGAAACTCAAGTCTGGCCGCGAAACCTTCAAGAGGATGTCCCGCTGGCTACAGGAGCCAGAGTTTCAGAGGATGGCCTCGTTACGTCTGGAAGCTTGTAAGCGTAAGGAGCAGGAGCAGTCCAAGCTAGAGCGCAACCAGGGGCCCAAGCGCACCCGGCTAGTCTTCACAGACCTGCAGCGCCGCACTCTCATGGCTATTTTCAGAGAGAACCACCGACCGACCAAAGACCTGCAGATCACCATTTCTCAGCAGCTGGGCCTTGAGCTTTCCACCTCCACATTTACTGTACGACGATCATACGTGCTGCGCCGCAGTCTCTCGGGGGCATGTAGTGAGGCCCCTTCACAGCACGCACTTAAAAGAGGGCCCATGAAAGAGGCCATCGACTTTTGCCGACTTCAAAGAGGCCCTTTTTATCTGTGTCCTCTTGGCGGCTGGGGCCGGAGCTCGGTCGGGCCCATGGGCTTAGGGCGTTCACCGGGAGGGGTGGCAGATCAGAGGCTAGCTGCATTACTGAACCACGGCAAGGAAGGGGAGGGGTGGTGAATGGGAGTTTGGGGATGGGAATTAAAGTTTAATGAGCGACAATTGTAAGCGTGCTGCGCACAGGGCAAAGGGTGTCAGCTTGTGCGTCTCAACTCTCCAGGTCACCCTGTTGCAGTGCTAGTAGTTTACTGGGCTTCTCTTTTCATAGAGATGTAAGGATTTAGGTTATTATAATTTGCAAAATTTCAGCGGTAGATGGTTAGCGATCACTTGATGACCTGTAGCGTCCCTAAGATCACATTTAGCTGATCATGGCTGACATAAGTTAGTGATTGGCGCCTCCTGGTGGACATTTTGTTCACACAGACTTATTGTCAGTGAGGAGAGGTACTAATAAA
>TU162857
ATCTAGCCACACACACACTGAGACAGGGAAGACACCACATCGCCGGGCAGGAAAGCAAAATGGATTCAGGACAAATTGTGTGGAAATAGATGGATACACTGAGGGGACTTGCAAAATGGGGTATTTCTGGGGTCTGGAGGACATTGTCTTATGATAAAATTGAAGATGTGATGGAGAACATGGATGCTAGCATCCGCAAAGAGGAAGAGGAAAAAAATGGAAGAGAGAGGGGCAGGGAAAAGGATGCTAACCGACTGCAAGGCAATTTCAGACCCTCCACCCACCCACAGAGCATCTATTAGACTGGATATACCCTTGTGCAGAACACATGTTCTTATAAACACACAAACAATGCTGTGAGACCTTCACACTCACTCACAAGCTGATGATGTGTGACTTCTGTATGGACAAAAAGCAGATCATTGTGTTTGCATAGATGTGTATTTATATTGTGCAATGCATGTGGGTGTTTGAAGTACTCTGCTGCTGCTGCTGCTGTTGCTGTTGTTATTTTGTGTTTCAGTTGGAATGAATGTGCAATGAAAATGCAGGCAGAATCATGTTAAAGTGTATGTATGTTCAGTGTTGTGAGGCAGAGGCAGGATTTTTTTTTTTTTTTAGCTTTGGTTTAGATTGGAAATGGCTGCTCTTTCATTTAATGCTGGTACTTTTGATTTGGAGAAGGCCTTGCGTCTTAAATTATTTTAATAACTAAAATCTAACGCTATTTTTATTATTAGAATTTTAAATCTCAATTTAAATGTTGTTAAATTATTTTTAAAATAATTCTAATGTTTTTTTATTCCAAACTGATTAATCTGGATTGCGTCATCGTGTTGCGTCAGAATCTGAACTAAGGGCTAAAATGCTATACTTTGTTTTAACGCCTAATTTTATTAGGTTCAGTCGAATCTAAACGCTGTGCAGCATGTAAAATATTAAAAATCTTTTAGTAATTTATATTAAATATGCTGTATTATATATATATATATATATATGTATATGGCCAGTTGTTAGACTCCGATTGCTAATAATTCACAATGGTAATAATAGATTGCCATCCTGCATGTTGGCAGCACGCCCATGTTTCCCAATCGATAAACAGAACCAAATACACGGGCGCGCGCCCATTTGAATGCGGCTGAACACTTGCTGTGGCTCAGAGGTTAAATCGTAAAATCATAGAAAAGATTATCCTTTAACACTGTGGCTGAGTTTGTGAATGTGACTAGTGAAACGTTACTGAAAGCTGAATATGAGCATGACCTTAATAATAATTCAGCAGACTCCCCTAATACAGTCTTGTCTCCATATTTGTGAGAATTATAAATCTCTCTCAGGGTTTGTCTGAAAATGGTTCTCTTTATATAGAACCTTTATAATAAATACCTTTATACATAAATAAAATAGGCTATATACCTGCAGGCCTATAGGTAGGCCTATTATTTATTTTATTCTTTATAAAATCGTGAATTCTAGTGAAGAATTTAAACTCCTTATTGACTTATATTGAAACTATTAGGCTTGCGGGACAAAAGCATCAAGCTGTATGTATGGCTTATGAACATAATCAGAAATTATTTTTAAACAAAATAATGCATGCAGTGGACATAAGGTACTGTATGAATATGCTCTTAGATGTAGGATCATATGTAATGTAAGATTTATTGTGTTACATTTTCTTTTTTTTTTTTAAGTTAAAAATAAAGATTTACACTTAAGTTTAAACTTCAAAACGCAAAATCAAACAAAGAAAGTTAAATGTAGCCTACATTGAGGTTCTTGGATACCGAGTATAATTAATAAATTCCTCTACTTTTTTTCCTGATTCAGTCTGTTAAACTAATCTTTCAGAAAATAAAATAATTAAAAAATTTTAATGTAAAATATTTATAGATATATAATTTTACATTTTTAAAATTGTTAGGCTATTAAATAATCCTCGGTTAGAAGTTTGTAATTGTAAAGCTACAGTGTACCATTACAGTCAGGCGCACAAAGTTTTATTTTTCATATGTTTTTCTTTTTTTCTGTTTCATGGGCCTGCTCTCCATGAGGTTCGGGCATGTTAATTGAGTTATTGACTTTTTTATCGATCGAGTTTTTTTATTATTCACCGTGCGTCCTATTATTTTTGGACGAAATTAATTTATTTAGCCCCTTTGTATTTCGCATGTGAATGCACGTTTTAGGTTGTATAACGTATCATTTTATTTCATTTATTCGTGTACTATTGGCCTGTGCTTCCGAAGCCAAAATATTAATATTGATATAAAACATTAACACTAAAACAGGAGACATAAACGTATGTTAACAAATATTGCTGAAATGTAAATAATGTGTCTCACAGTTAGAAGCCGATATTACACACTTCTCAGATGGATGAAATTTGTTAAATTTAAAAAGAATAAGCGACATAATTGTAGGTTAACAGTAGTAAAATATTTTTATTATTATTTAAGCTTGTTGCACAATTTCATGAATTGTTTTGCACGACGGATTCTTCACAGTGCATTAGCAGATTTGTGTAAGTTGTTTTTCATTTGTTAGATTGCTTGTGGTTTTTAAAAAGGTCTTTGATTATTTGTAATATTTTTCAGGCTCTATATGATAACGCCAAAGCGCTGCAATAAGAGGGCAAACAGATAAACCTGAATGGAGATAAAAAGCTAGATTTAGCAAATTATACTTATGCGTAACTCTTTTTAAAAAACAATATTATTTAAATAATTTTTGCATGGTAACTGCTATAAGGCTACAAATATAAACACTGACTTCTCTCCAATTTTCAATGAAATGTTTATGTAAATATTTCTTATGTTAGGCTATGAAGCTGTCGTGTTTCAACAAATGAGTATGTATTGCGCTTTATATGTCTTTTCACAAAATAAATGAACA

Function

symbol description
onecutl Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in nervous system; neural plate; neural rod; and neural tube. Orthologous to human ONECUT1 (one cut homeobox 1).

NR:

description
One cut domain, family member, like

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_07993673_08002214.mRNA False 3649 mRNA 0.45 8 7993335 8003665
TU162857 True 2898 lncRNA 0.33 1 8003366 8006263

Neighbor

gene id symbol gene type direction distance location
CI01000027_07924688_07926502 LINGO4B coding downstream 66833 7924130 ~ 7926502 (-)
CI01000027_07904624_07919811 NA coding downstream 73524 7904624 ~ 7919811 (-)
CI01000027_07888504_07893711 TLR18 coding downstream 99624 7888504 ~ 7893711 (-)
CI01000027_07876459_07878548 NA coding downstream 114787 7875493 ~ 7878548 (-)
CI01000027_07850115_07861432 BCAN coding downstream 131903 7849703 ~ 7861432 (-)
CI01000027_08016916_08025375 NA coding upstream 12864 8016529 ~ 8025455 (-)
CI01000027_08073979_08077754 SCNM1 coding upstream 69996 8073661 ~ 8077754 (-)
CI01000027_08081583_08083496 TNFAIP8L2B, TNFAIP8L2 coding upstream 77604 8081269 ~ 8083496 (-)
CI01000027_08091338_08097220 NA coding upstream 87628 8091293 ~ 8097220 (-)
CI01000027_08134523_08134951 NA coding upstream 130822 8134487 ~ 8135309 (-)
G143316 NA non-coding downstream 8042 7950704 ~ 7985293 (-)
G143320 NA non-coding downstream 28555 7956068 ~ 7964780 (-)
G143372 NA non-coding downstream 46814 7946278 ~ 7946521 (-)
G143371 NA non-coding downstream 48256 7944848 ~ 7945079 (-)
G143341 NA non-coding downstream 188569 7804315 ~ 7804766 (-)
G143383 NA non-coding upstream 16486 8020151 ~ 8021259 (-)
G143385 NA non-coding upstream 19089 8022754 ~ 8022982 (-)
G143314 NA non-coding upstream 29316 8032981 ~ 8033981 (-)
G143389 NA non-coding upstream 48846 8052511 ~ 8052858 (-)
G143393 NA non-coding upstream 86337 8090002 ~ 8090731 (-)
G143325 NA other downstream 107286 7884535 ~ 7886049 (-)
G143267 NA other downstream 319566 7669329 ~ 7673769 (-)
G142299 NA other downstream 553144 7439178 ~ 7440191 (-)
G142209 NA other downstream 835337 7153623 ~ 7157998 (-)
G142203 NA other downstream 850272 7141094 ~ 7143063 (-)
G144365 NA other upstream 2535115 10538780 ~ 10542148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010779 NA non-coding NC_007127.7 CM002900.2 29531348 ~ 29538953 (-)