RNA id: TU162857


Basic Information

Item Value
RNA id TU162857
length 2898
lncRNA type sense_over
GC content 0.33
exon number 1
gene id CI01000027_07993673_08002214
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7993335 ~ 8006263 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCTAGCCACACACACACTGAGACAGGGAAGACACCACATCGCCGGGCAGGAAAGCAAAATGGATTCAGGACAAATTGTGTGGAAATAGATGGATACACTGAGGGGACTTGCAAAATGGGGTATTTCTGGGGTCTGGAGGACATTGTCTTATGATAAAATTGAAGATGTGATGGAGAACATGGATGCTAGCATCCGCAAAGAGGAAGAGGAAAAAAATGGAAGAGAGAGGGGCAGGGAAAAGGATGCTAACCGACTGCAAGGCAATTTCAGACCCTCCACCCACCCACAGAGCATCTATTAGACTGGATATACCCTTGTGCAGAACACATGTTCTTATAAACACACAAACAATGCTGTGAGACCTTCACACTCACTCACAAGCTGATGATGTGTGACTTCTGTATGGACAAAAAGCAGATCATTGTGTTTGCATAGATGTGTATTTATATTGTGCAATGCATGTGGGTGTTTGAAGTACTCTGCTGCTGCTGCTGCTGTTGCTGTTGTTATTTTGTGTTTCAGTTGGAATGAATGTGCAATGAAAATGCAGGCAGAATCATGTTAAAGTGTATGTATGTTCAGTGTTGTGAGGCAGAGGCAGGATTTTTTTTTTTTTTTAGCTTTGGTTTAGATTGGAAATGGCTGCTCTTTCATTTAATGCTGGTACTTTTGATTTGGAGAAGGCCTTGCGTCTTAAATTATTTTAATAACTAAAATCTAACGCTATTTTTATTATTAGAATTTTAAATCTCAATTTAAATGTTGTTAAATTATTTTTAAAATAATTCTAATGTTTTTTTATTCCAAACTGATTAATCTGGATTGCGTCATCGTGTTGCGTCAGAATCTGAACTAAGGGCTAAAATGCTATACTTTGTTTTAACGCCTAATTTTATTAGGTTCAGTCGAATCTAAACGCTGTGCAGCATGTAAAATATTAAAAATCTTTTAGTAATTTATATTAAATATGCTGTATTATATATATATATATATATATGTATATGGCCAGTTGTTAGACTCCGATTGCTAATAATTCACAATGGTAATAATAGATTGCCATCCTGCATGTTGGCAGCACGCCCATGTTTCCCAATCGATAAACAGAACCAAATACACGGGCGCGCGCCCATTTGAATGCGGCTGAACACTTGCTGTGGCTCAGAGGTTAAATCGTAAAATCATAGAAAAGATTATCCTTTAACACTGTGGCTGAGTTTGTGAATGTGACTAGTGAAACGTTACTGAAAGCTGAATATGAGCATGACCTTAATAATAATTCAGCAGACTCCCCTAATACAGTCTTGTCTCCATATTTGTGAGAATTATAAATCTCTCTCAGGGTTTGTCTGAAAATGGTTCTCTTTATATAGAACCTTTATAATAAATACCTTTATACATAAATAAAATAGGCTATATACCTGCAGGCCTATAGGTAGGCCTATTATTTATTTTATTCTTTATAAAATCGTGAATTCTAGTGAAGAATTTAAACTCCTTATTGACTTATATTGAAACTATTAGGCTTGCGGGACAAAAGCATCAAGCTGTATGTATGGCTTATGAACATAATCAGAAATTATTTTTAAACAAAATAATGCATGCAGTGGACATAAGGTACTGTATGAATATGCTCTTAGATGTAGGATCATATGTAATGTAAGATTTATTGTGTTACATTTTCTTTTTTTTTTTTAAGTTAAAAATAAAGATTTACACTTAAGTTTAAACTTCAAAACGCAAAATCAAACAAAGAAAGTTAAATGTAGCCTACATTGAGGTTCTTGGATACCGAGTATAATTAATAAATTCCTCTACTTTTTTTCCTGATTCAGTCTGTTAAACTAATCTTTCAGAAAATAAAATAATTAAAAAATTTTAATGTAAAATATTTATAGATATATAATTTTACATTTTTAAAATTGTTAGGCTATTAAATAATCCTCGGTTAGAAGTTTGTAATTGTAAAGCTACAGTGTACCATTACAGTCAGGCGCACAAAGTTTTATTTTTCATATGTTTTTCTTTTTTTCTGTTTCATGGGCCTGCTCTCCATGAGGTTCGGGCATGTTAATTGAGTTATTGACTTTTTTATCGATCGAGTTTTTTTATTATTCACCGTGCGTCCTATTATTTTTGGACGAAATTAATTTATTTAGCCCCTTTGTATTTCGCATGTGAATGCACGTTTTAGGTTGTATAACGTATCATTTTATTTCATTTATTCGTGTACTATTGGCCTGTGCTTCCGAAGCCAAAATATTAATATTGATATAAAACATTAACACTAAAACAGGAGACATAAACGTATGTTAACAAATATTGCTGAAATGTAAATAATGTGTCTCACAGTTAGAAGCCGATATTACACACTTCTCAGATGGATGAAATTTGTTAAATTTAAAAAGAATAAGCGACATAATTGTAGGTTAACAGTAGTAAAATATTTTTATTATTATTTAAGCTTGTTGCACAATTTCATGAATTGTTTTGCACGACGGATTCTTCACAGTGCATTAGCAGATTTGTGTAAGTTGTTTTTCATTTGTTAGATTGCTTGTGGTTTTTAAAAAGGTCTTTGATTATTTGTAATATTTTTCAGGCTCTATATGATAACGCCAAAGCGCTGCAATAAGAGGGCAAACAGATAAACCTGAATGGAGATAAAAAGCTAGATTTAGCAAATTATACTTATGCGTAACTCTTTTTAAAAAACAATATTATTTAAATAATTTTTGCATGGTAACTGCTATAAGGCTACAAATATAAACACTGACTTCTCTCCAATTTTCAATGAAATGTTTATGTAAATATTTCTTATGTTAGGCTATGAAGCTGTCGTGTTTCAACAAATGAGTATGTATTGCGCTTTATATGTCTTTTCACAAAATAAATGAACA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162839 lncRNA downstream 18073 7950704 ~ 7985293 (-) False G143316
TU162840 lncRNA downstream 18073 7950704 ~ 7985293 (-) False G143316
TU162838 lncRNA downstream 18178 7950704 ~ 7985188 (-) False G143316
TU162836 lncRNA downstream 18178 7951255 ~ 7985188 (-) True G143316
TU162844 lncRNA downstream 38586 7956068 ~ 7964780 (-) False G143320
TU162910 lncRNA upstream 13888 8020151 ~ 8021259 (-) True G143383
TU162912 lncRNA upstream 16491 8022754 ~ 8022982 (-) True G143385
TU162834 lncRNA upstream 26718 8032981 ~ 8033981 (-) True G143314
TU162916 lncRNA upstream 46248 8052511 ~ 8052858 (-) True G143389
TU162920 lncRNA upstream 83739 8090002 ~ 8090731 (-) True G143393
CI01000027_07924688_07926502.mRNA mRNA downstream 76864 7924130 ~ 7926502 (-) True CI01000027_07924688_07926502
CI01000027_07904624_07919811.mRNA mRNA downstream 83555 7904624 ~ 7919811 (-) True CI01000027_07904624_07919811
CI01000027_07888504_07893711.mRNA mRNA downstream 109655 7888504 ~ 7893711 (-) True CI01000027_07888504_07893711
CI01000027_07876459_07878548.mRNA mRNA downstream 124818 7875493 ~ 7878548 (-) True CI01000027_07876459_07878548
CI01000027_07850115_07861432.mRNA mRNA downstream 141934 7849703 ~ 7861432 (-) True CI01000027_07850115_07861432
CI01000027_08016916_08025375.mRNA mRNA upstream 10266 8016529 ~ 8025455 (-) True CI01000027_08016916_08025375
CI01000027_08073979_08077754.mRNA mRNA upstream 67398 8073661 ~ 8077754 (-) True CI01000027_08073979_08077754
CI01000027_08081583_08083496.mRNA mRNA upstream 75006 8081269 ~ 8083496 (-) True CI01000027_08081583_08083496
CI01000027_08091338_08097220.mRNA mRNA upstream 85030 8091293 ~ 8097220 (-) True CI01000027_08091338_08097220
CI01000027_08134523_08134951.mRNA mRNA upstream 128224 8134487 ~ 8135309 (-) True CI01000027_08134523_08134951
TU162851 other downstream 117317 7884535 ~ 7886049 (-) True G143325
TU162783 other downstream 329597 7669329 ~ 7673769 (-) True G143267
TU161694 other downstream 563175 7439178 ~ 7440191 (-) True G142299
TU161593 other downstream 845368 7153637 ~ 7157998 (-) True G142209
TU161596 other downstream 845553 7153623 ~ 7157813 (-) False G142209
TU163997 other upstream 2532517 10538780 ~ 10542148 (-) True G144365

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022175 True 2112 lncRNA 0.32 2 NC_007127.7 29531348 ~ 29538953 (-)