RNA id: CI01000027_07888504_07893711.mRNA


Basic Information

Item Value
RNA id CI01000027_07888504_07893711.mRNA
length 2559
RNA type mRNA
GC content 0.44
exon number 3
gene id CI01000027_07888504_07893711
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7888504 ~ 7893711 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCTTTTCTCGCTGGCTCTACTTCTCAGCCTCCAAGCAGTTCTGCAAATTAAGCCAACTAAAGCCAAACATTCCTGTACAATTAGATCTGATGGCCGTGCAGCTGACTGTAAAGGTCTATGGCTAGACAATGTGCCTATAACAACGCTGCCTGACTCTTTGGAAGAGCTCGACTTGTCTTTCAATATCATACAGGTCATCCGCAAACAAGAATTTTTCAAACTTAATCATCTGCGAGTCCTCAAGCTTAATTTCAACAACATCTCTCTGATTATGGATGATGCCTTTCATGGAAACCTTCTGCTGGAGGATCTAAACTTATTTAATAACTCTATGACCGAAATCCCCTTCAAAGCTCTTGAGTTCCTCACAAATTTGAAGGTTTTAGAAATGTCCAATAATTTGTACACACAAGTATCTCTTGGTGCTGCTTTTTTGAATTTCACCAAGTTGGAAGTGCTGTCCATTGGTGGACCCCTGGTCAGTAGATTAGGAAGCCGTGACAATTATGTGTTGAAGAACATCTCACTGAACAAATTTGCTATTAAAACTGGTACTGGTTTTAAAAGTTATGAACCTGGATATTTCAGCAACCTCAACACAAAAAACTTGTGGTTCGATATAGCTATTGACAAAGAACCAGATGTGCTTCCTAAGATATTGAAAGATCTAGCCAACAAGACTTTTGATGTGCTACGTTTTCGAAACCTTTTTGAATTTCAGTACTATACTGGTAAACGGGATATTTTTTATGGCCTGCAGTTTGTAAAGACTCAACGCCTAACATTCTTTCGAGGTAAATTCAATGAGGAAATTATGAGGATGGCTCTGCTAAATGTGGAAATTAGTCCAATCAAAGCCCTGGAACTGCTGTTCATCGATTTTGCTCGTTCACTGAATAAAACGCAGGGATCCAGTGTGACAAACTTGACCTTGGAACAACTGGTTCTCGCGGACATCAGTAATCCAGATATAATGCGCTTCGACTGGAGCTTTACCTGGCTTAATCATGTCCGCCAATTCATTGTACGGAATGTAAACTTCAACAGTGTGCCGTGCGACTCGTGGCCGGAGATGAAAAATGTTGAGCTTCTGGACATCTCTAACAACCAGCTGAGGGACAGTTATATTTATAACCCACTATGTGACACTAGAAACACATTACACAAGCTCAAAACCTTTAACATCAGCCGTAATCGACTTACCAGCCTCAGTGACTTGGCATCTCTGACTGAGGACTTTGTCAAGCTGACAACAATTGATATGAGTTACAACCAGCTGCAATATATGGGGAAGCGTGTCTGTTACTGGAGACAGACCATTACCAAAGTAATCGCTCATCATAATAGTCTGACGAGCGACAGTTTTAAGTGCCTCCCCACTTCTGTAATCTTCCTCGATCTTTCATACAGCAGCCTAGACCAGTTGGACATGGACTATTTTAATAAGGCATCCAACCTGACAGAGCTTCTCCTCAGCGGCAACAAGATCAAATTCATCCCATCCGGCTGGAGGAATCCATACTTGAGGACACTCGCTTTAGATGGAAACTCATTTGGACTTGTTAGCATGACGTCTTTTAAGGACATGCCTAGCCTACGTGTCCTGACCGCAGGCAACAACCCTTACCACTGTATCTGTGATCTCTACACTTTCATACAAGAAACCACAAGCAAAAGGAAGGTGACCATCACAGACTGGCCGAACAACTACAAGTGTTACCACCCTGAGCGTCTGCTCAACACAATGGTATCCCAATACTTCCCTGGTCATTTAGCCTGTAATATTACACTCATTATCATCATCTCTGTGTCAACAACGGCGGTTGTTGTTCTTGCTATCACGCTTTTGTGCTACATTTTCAATGTTCTATGGTACATTAAAGCCACATACCAGATCATCAGAGCCAAATACAGAGCCCATAAAGAAGGGTCAGGTCAGACTGTGGACTACACCTTTCATGCTTTCATTTCTTACAGCCACCTGGATGCAGACTGGGTCCGAGACCAGCTGCTCCCTTGTCTAGAGAATGCTAAGCCTCCTTACCGCCTCTGCATCCATGAAAGAGACTTCATTCCAGGGAAGTGGATAATTGACAACATCATTGAGAACATTGAAAATAGTCGCAAGGTAATCTTCGTGTTATCGCGGAGCTTCGTGAACAGCGTGTGGTGCAACTACGAGCTCTACTTCGCCCAACAGCGGGCCATTGGAAAGACGTTCAGTGATGTCATTCTGATCGTGAAGGAGCCCATTGATCCCACTTCTCTTCCCAGCAAATTCTGCAAGCTCAAAAAGATGCTCAGTACCAAAACCTACCTAGAGTGGCCCCAGCAACCCACAGAACAGAGCTTTTTCTGGATCCAGCTGAGGAGTGTTCTGGGCAAACCAAACGTAATAAGACAGCGCACAACCAGCCAGCGTAGCCGTCTGTCTTCAGTGAGGTCCGTTTCATTGATAGAGCTGCCGCAGAACCAGAATTCTGCAGATGAAGATGACCACCAGGTCAGCGATCAGCCTTCTAATAGATGTCAACAAACTTTGAGAGAAATTGCTTGA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162867 lncRNA downstream 83738 7804315 ~ 7804766 (-) True G143341
TU162860 lncRNA downstream 89860 7793708 ~ 7798644 (-) True G143334
TU162823 lncRNA downstream 112876 7775403 ~ 7775628 (-) True G143304
TU161703 lncRNA downstream 345549 7539471 ~ 7542955 (-) True G142307
TU161718 lncRNA downstream 434900 7448773 ~ 7453604 (-) True G142320
TU162898 lncRNA upstream 51137 7944848 ~ 7945079 (-) True G143371
TU162899 lncRNA upstream 52567 7946278 ~ 7946521 (-) True G143372
TU162838 lncRNA upstream 56993 7950704 ~ 7985188 (-) False G143316
TU162839 lncRNA upstream 56993 7950704 ~ 7985293 (-) False G143316
TU162840 lncRNA upstream 56993 7950704 ~ 7985293 (-) False G143316
CI01000027_07876459_07878548.mRNA mRNA downstream 9956 7875493 ~ 7878548 (-) True CI01000027_07876459_07878548
CI01000027_07850115_07861432.mRNA mRNA downstream 27072 7849703 ~ 7861432 (-) True CI01000027_07850115_07861432
CI01000027_07821062_07827997.mRNA mRNA downstream 60412 7821062 ~ 7828092 (-) True CI01000027_07821062_07827997
CI01000027_07709714_07744049.mRNA mRNA downstream 144455 7708557 ~ 7744049 (-) True CI01000027_07709714_07744049
CI01000027_07692521_07693509.mRNA mRNA downstream 194896 7692521 ~ 7693608 (-) True CI01000027_07692521_07693509
CI01000027_07904624_07919811.mRNA mRNA upstream 10913 7904624 ~ 7919811 (-) True CI01000027_07904624_07919811
CI01000027_07924688_07926502.mRNA mRNA upstream 30419 7924130 ~ 7926502 (-) True CI01000027_07924688_07926502
CI01000027_07993673_08002214.mRNA mRNA upstream 99624 7993335 ~ 8003665 (-) False CI01000027_07993673_08002214
CI01000027_08016916_08025375.mRNA mRNA upstream 122818 8016529 ~ 8025455 (-) True CI01000027_08016916_08025375
CI01000027_08073979_08077754.mRNA mRNA upstream 179950 8073661 ~ 8077754 (-) True CI01000027_08073979_08077754
TU162851 other downstream 2455 7884535 ~ 7886049 (-) True G143325
TU162783 other downstream 214735 7669329 ~ 7673769 (-) True G143267
TU161694 other downstream 448313 7439178 ~ 7440191 (-) True G142299
TU161593 other downstream 730506 7153637 ~ 7157998 (-) True G142209
TU161596 other downstream 730691 7153623 ~ 7157813 (-) False G142209
TU163997 other upstream 2645069 10538780 ~ 10542148 (-) True G144365

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021078 True 2777 mRNA 0.43 5 NC_007127.7 29391884 ~ 29405009 (-)