RNA id: TU161718


Basic Information

Item Value
RNA id TU161718
length 2129
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G142320
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7448773 ~ 7453604 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGATTTGTTTTTTGGCTTTATTGGGATAATAATAGGCCTGAATTATAATACAAGCAACCAGTCCAGACATTCAAAGTAGTCTGCCGAAGAGCCGAGTGACACAAGGATACTTACCAAGTGGTTACCCCGGCAACATATCAGACCTTCAACAGCTTTTAAATAACATCGCTTTCAGTCCTACATCAGTACATACACACACCGCATAGTATGTCTACAGCAGACACACAGATATACCGAGCAACAAACGCTCACATGAGCATAAACAACTGGGTGAATGAATATGTACATACATACAAGAAAAAAGAGAGAGCAGATTCATAAAATGCACTGAACATACAGTGGGATACAACAGTCTGAGACTACTAGTGAAAATGATTGAACAAACATTTTTTGTTTTTTTAATAATAATAATAATAATAATAAAAAATCATATTTATGACAAATACTGTCAGTATAACAATTTGAGTAAAAAAGAATTTGGTGCATCCCCTTTTTGCTTCAATAAAAGCAGCACTCGAGTTGCATAAACACATTTGCATATTTGATTAGTGACCTATATCGAATTGTAAACACATCAACTACTTACTGGTTTAGTTTGTCAAAATCTTAAATTAGATTCTGAATCCCAGATTTTCAGCGTGGTCTCAGACTTTTGGACCCCACAGTATATCCAAATCCAACATTAAAACACTTAACACGCATACAATGAGATCAAAGGGGGTGCAATATATTGTGAAAAACATCAAATTATATGAATAAACTGATAATGGTTTAGAGGAAAAGGACATCTAATGATGGATATAAATGATTACTAGAAAGGCACTTAAGACAAAAACGACAGTTTGGGAAAGAAAAGCTGGTGGCTGTTTATGTGAGTGAGTGTGTCTGAATCCAGTCTAAATGTGCCGTCCACTGCACTCACACACTAAGGCAAGTCCAAAACAAAATAATTATAACAATACAACATACATTGAAATTAAAATACAGTGGTTAAAATAAAAAAAGGCATCTAAAGCTATATGATCCTTCAGTTTAAAGCAATGCATAGTGTTTTGTTTTCTTTTACAGGTGGGTCTGCTTGTCTGAAGTCCACTAGCAATGTTGGCAAAAGTCCTACTGTTTATGCTAGAGTCGCAAGAAATTGAAAATCACATTTGAAAATCTGCGTTCAACACCAAAGCCAAAATGACTGATTAACAGGAACAAATGGTGCATTATGTAAACTTATTTGGTTTCACAAAGCTTCAGCTGTATTCTACTCATGAATGCATGATACCAATAAAACTAAAAATAGGTGAGATTTAGATTGTAGATCCCATTATAGTGGTTTTATGTGTTTTAACCCATTAAGATGTGGAAGACATTCCACCGGTCATCCCATAAAATGTTCAAAAATAAGTGCTGGGAAACACTTAGTGGTATAGTTGCAGTGTACACATGTTGCCACTAGATGTCATATTGCTCAAAAACAGCAGCATCTCATAAAGCTTAAACAACATTTCACCTTCAATACAATGGCTTGCGATATTTTTTGCTGAAAGTGTATGTCTGGAAAGCCATAGCATTTGTGCATTAGATTGGTGGTATTTAATGGTGTTTTTTTGCTTGGAAACTTCTGTTCTTCCTCATTCAGTCGTGAGGCAGAGCAGCTCCAATAATTATTTGTGCTATGGCTTTTTTGGCTTTCACTGCCACAGGCAAATAGCCACGCACAGACCTGCGCTCATAAGGCAACTCCATTCAACAGTCCAGCAAGGGACCACAGGGGAAGCACTTAAAGGAACAGTTCGCCCAGAAAAATTAAACTTCGGTCATTTACTCACCCTCACAACATTTCAAACCTGTATGACTTTTCATGTTCCGCAGGAGAAAGTACAATATTTTGAAGAATGTTTCATCTGTTCTCACTGACTTTCACTGTATGGACAATCAGACATTTAAAGAATTAGTTCACTTTCAAATGAAAATTACCCCGAGCTTTACTCACCCTCAAGCCATCCTAGGTGTATATGACTTTCTTCTTTCAGACAAATACAATCGGAGTTATATTAAATAATATCCTGGCTCTTCCAAGGTTTATAATGGCGGTGAATAGAGGATGAGATTTTGAAGCCCAAAAAAGTGCAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161644 lncRNA downstream 63282 7360940 ~ 7385491 (-) True G142254
TU161636 lncRNA downstream 94535 7335871 ~ 7354238 (-) False G142248
TU161638 lncRNA downstream 104193 7335871 ~ 7344580 (-) True G142248
TU161637 lncRNA downstream 112057 7335871 ~ 7336716 (-) False G142248
TU161565 lncRNA downstream 119678 7326174 ~ 7329095 (-) True G142182
TU161703 lncRNA upstream 85867 7539471 ~ 7542955 (-) True G142307
TU162823 lncRNA upstream 321799 7775403 ~ 7775628 (-) True G143304
TU162860 lncRNA upstream 340104 7793708 ~ 7798644 (-) True G143334
TU162867 lncRNA upstream 350711 7804315 ~ 7804766 (-) True G143341
TU162898 lncRNA upstream 491244 7944848 ~ 7945079 (-) True G143371
CI01000027_07291684_07291971.mRNA mRNA downstream 156802 7290753 ~ 7291971 (-) True CI01000027_07291684_07291971
CI01000027_07280569_07290167.mRNA mRNA downstream 158283 7280215 ~ 7290490 (-) True CI01000027_07280569_07290167
CI01000027_07190301_07196617.mRNA mRNA downstream 251771 7190071 ~ 7197002 (-) True CI01000027_07190301_07196617
CI01000027_07022724_07029894.mRNA mRNA downstream 418745 7022108 ~ 7030028 (-) True CI01000027_07022724_07029894
CI01000027_06975907_06983141.mRNA mRNA downstream 465090 6975907 ~ 6983683 (-) True CI01000027_06975907_06983141
CI01000027_07462193_07463023.mRNA mRNA upstream 8326 7461930 ~ 7463215 (-) True CI01000027_07462193_07463023
CI01000027_07473568_07489464.mRNA mRNA upstream 19295 7472899 ~ 7489775 (-) True CI01000027_07473568_07489464
CI01000027_07495449_07517906.mRNA mRNA upstream 41845 7495449 ~ 7517906 (-) True CI01000027_07495449_07517906
CI01000027_07520072_07528984.mRNA mRNA upstream 65881 7519485 ~ 7528984 (-) True CI01000027_07520072_07528984
CI01000027_07564783_07576342.mRNA mRNA upstream 110988 7564592 ~ 7576800 (-) True CI01000027_07564783_07576342
TU161694 other downstream 8582 7439178 ~ 7440191 (-) True G142299
TU161593 other downstream 290775 7153637 ~ 7157998 (-) True G142209
TU161596 other downstream 290960 7153623 ~ 7157813 (-) False G142209
TU161587 other downstream 305710 7141094 ~ 7143063 (-) True G142203
TU160955 other downstream 652066 6788627 ~ 6796707 (-) True G141638
TU162783 other upstream 215725 7669329 ~ 7673769 (-) True G143267
TU162851 other upstream 430931 7884535 ~ 7886049 (-) True G143325
TU163997 other upstream 3085176 10538780 ~ 10542148 (-) True G144365

Expression Profile