CI01000027_07520072_07528984 (DCST1)


Basic Information

Item Value
gene id CI01000027_07520072_07528984
gene name DCST1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 7519485 ~ 7528984 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_07520072_07528984.mRNA
CTTTGGAGCAGGTGTGTAAGCGTATTCTGCCACCTGGAGTTCATAGGTTCCTGTTCGGCCCGCTGTCAGAGTTTCCTGTGGTCAGACGTCTCACGGGCGCTGTGTTTGGAGCTTTGAGTGGTGTGGGGTTGTTTTTCGGACTCATGCACAATATTGCCATGACACCAGTACAACGTGTTGTTGTTGGATGTGTGTTTGTAGGTCTGTGTAGTCTTGGAGGCATGTTTTCCTCATTGTTCCGCTGCTCTGTCCTCCTGATGTTTCCTAGTATGATTGGATCTCAAGGTCGGACATTCCTGATGGTTTTTGTGCTTCATGGACTTTACCAAGGCCCCATTGCAAACATCCAGCATAATGTGCAGGATGTGGCCTCCTCCATGGGCTGTAACATAGACCTGCAGATCACACACAGCAAGGTGATGTGGAGAATGCTGACCGAGCCTTACGTGCAAGTAGTGCAGGAGATAGTGAATGACAGTGAGGAATTTCAAAAAGAGTCTCAAAATGTGAGCAAAAAGTTCCAGAAGATTCGGGATGAGGTGATGGGTCGATACGGATATGACTCTCTTGGTAAGGAGTCCGTCCATACGGCCAACAGCACTCAGGAGGAATATGTAACGAAAACGAGAGCACGCTGTGACTATGTGGTGCAGCAGGGAATTAGCCGATGTCAGGATTGGTTCAGCAATAAGTGGGAAGAGTGTATGAATACCATTCAAGCCCCTCTTATAAACAACTTCCTCTGCATACCTATGCAGTTCCACTTTCTGTGTGATATCATGAGAGTGATGACAACATGGTGCACAGAGAAGATCCCTGTTGAGGGAAACTTTGGTCAGACCTTCGACAAACTAAATGACTCCATCAACAGGCTTGCAGAACACTTCACCACCAATGTAGTGCTTAAGAATTTGGAGCAGCAGTCAGTGTTTGGAGTGAACGTCCTCCAGAATTTCTCTAAGGAGCTGAGCCGTGTGTTTCAGGAGAAAACAGTAATCGCTGAGAAGATAGCTGGGGTGATTAACTTCCTTCTCTCATTCACCTTCATCACGGTGTTCACCTCAGCATTTGGATATGTTCGTCTATTTTGCAGAGACATTCACTTTGACAATGTCTACATAACTACTTACTTCAGACAGATTGATGCACGCAGAAGTAGAGCTATTGTGGGCTTCCTGCAAGTTGCATCTCTGGCTCTGTTTGTGTGTGTTCTGCTGGCTGTTGATGGAATCCTGTACAACATCTTTGACCTCATCCGAAGACACACTTTCACCACATACTCAGTTACTAGTGTTCATCATGCAGACATTGTAATCGGTGGAGATTCCATGTTAGCCAGACTTCTGCGGAAAACCATTGGTGCCTTTAACACCTCCTCCAATCTTGACGTGCAATCAAGTAACTTGCATTGTTTGCCCCAGCCACATGCTCTGAGCCAATCAAACTACTTGTGGATCTTCACCCCCCTTTTACTGATGTGCCTCATGTGCTGCCTGCAGGTATACACCAATCGTCTACGCAGGGTCATCACTGCCTTCTACTTTCCAAAGAGAGAAAAGAAACGGATCCTCTTCCTCTACAACCTACAGATCCAGAAACGAATCTCCTTCATCAACAGACAACGTCACCTGCTGAGAAATCAAAAACAGACATTTATAACGGTGCTGTCGGTTCTGTTGGCCCTTCTGAAGCGTGTGGGCTGTAGGTTGCACTGGTGCTGGGTGTGTAATAGGTTTGTGAGGCAGAACCAGGCTGTGGAGTGCAGTTCTGTAGGCTGCACAGTGATCTATTGTCAGCAGTGCTGGACAGACCTGGACAACATCTGCTACGCCTGCTTGCCTCATAAGCAGTGTGGACCTCAAGATAACAGCTCTGATTCTGATGTGTACTATGGCTGCTGATGAACTTCACTCCACCTTCAAAGTTCAGCTACTAACATGTAAAGTTTTCTTAGTCCCAAACTGCATTAATGGCTGAAACAAAAACAAAAAAAATCAACACGTGTCTTCTCTGGACAATTAAAGTGGCTTTGCTAAAGTGTAAACAACTGGAATTGGTTAAATCACATTTATTTTACCCAGAAATGACTTTCATGGTGTCCCCTGCGTCTGAAACTACATTGGCTACTTCCTTTACTATATAGAATATAAAAAGCATTAAGCGTGACGAGTATAAACGAATCCTATTCATCAAATGGTAGGCTATGTGAGAAATACCCGGATGATAATTCTACCAAGATTTTTTGCACTTTTTTTTTTTTTTTTTTTTTACACGAATATACTTCTTTAAACGGTAGTGAAGTAAGCTCTTTATCAAATATACTCAGACAGTATGTCATGTCAGACACAGCTGTCAACTTGTTAAATGATTATTTGTCAGTAATTTTCGTAATTTTTTTTTTTGCGCAGTGGACTTTTTGGCGGAGCAAAAGGCCTAACGTCATCTTGAAGTACGTTAATCTTTTAATTAATCTTAAAGTTTGAATAAA

Function

symbol description
dcst1 Acts upstream of or within response to mechanical stimulus. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in scale. Orthologous to human DCST1 (DC-STAMP domain containing 1).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_07520072_07528984.mRNA True 2488 mRNA 0.44 14 7519485 7528984

Neighbor

gene id symbol gene type direction distance location
CI01000027_07495449_07517906 ADAM15 coding downstream 1579 7495449 ~ 7517906 (-)
CI01000027_07473568_07489464 ABCB1, ABCB4 coding downstream 29710 7472899 ~ 7489775 (-)
CI01000027_07462193_07463023 NA coding downstream 56270 7461930 ~ 7463215 (-)
CI01000027_07291684_07291971 NA coding downstream 227514 7290753 ~ 7291971 (-)
CI01000027_07280569_07290167 NA coding downstream 228995 7280215 ~ 7290490 (-)
CI01000027_07564783_07576342 NA coding upstream 35608 7564592 ~ 7576800 (-)
CI01000027_07581095_07587079 SYT11B coding upstream 51809 7580793 ~ 7587079 (-)
CI01000027_07591755_07601032 NA coding upstream 61497 7590481 ~ 7601032 (-)
CI01000027_07665461_07665871 NA coding upstream 136318 7665302 ~ 7665871 (-)
CI01000027_07690842_07692012 NA coding upstream 161654 7690638 ~ 7692012 (-)
G142289 NA non-coding downstream 51963 7428257 ~ 7467522 (-)
G142320 NA non-coding downstream 65881 7448773 ~ 7453604 (-)
G142254 NA non-coding downstream 133994 7360940 ~ 7385491 (-)
G142248 NA non-coding downstream 165247 7335871 ~ 7354238 (-)
G142182 NA non-coding downstream 190390 7326018 ~ 7329095 (-)
G142307 NA non-coding upstream 10487 7539471 ~ 7542955 (-)
G143304 NA non-coding upstream 246419 7775403 ~ 7775628 (-)
G143334 NA non-coding upstream 264724 7793708 ~ 7798644 (-)
G143341 NA non-coding upstream 275331 7804315 ~ 7804766 (-)
G143371 NA non-coding upstream 415864 7944848 ~ 7945079 (-)
G142299 NA other downstream 79294 7439178 ~ 7440191 (-)
G142209 NA other downstream 361487 7153623 ~ 7157998 (-)
G142203 NA other downstream 376422 7141094 ~ 7143063 (-)
G141638 NA other downstream 722778 6788627 ~ 6796707 (-)
CI01000027_05447458_05450346 PON2, PON3.2, PON3.1 other downstream 2069122 5447424 ~ 5450461 (-)
G143267 NA other upstream 140345 7669329 ~ 7673769 (-)
G143325 NA other upstream 355551 7884535 ~ 7886049 (-)
G144365 NA other upstream 3009796 10538780 ~ 10542148 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010763 dcst1 coding NC_007127.7 CM002900.2 28711556 ~ 28727763 (-)