CI01000086_00587995_00596565 (BRAFLDRAFT_115002, ETFB, ETFB.L)


Basic Information

Item Value
gene id CI01000086_00587995_00596565
gene name BRAFLDRAFT_115002, ETFB, ETFB.L
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 587765 ~ 596739 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000086_00587995_00596565.mRNA
ACAGCTCAGCTTTTGATTGACAGCTCCCTGATCTGAACAGTTCTATTGGCTAACAGAATAGGCGTACGCTAAACCCCGCCTCAAATGGTGTCACACCAACACCGCTCCGGCTAGACTCTTGTGCTGAAGTTCACTCATGCTCTCGGTGATCCGTCGAGCAGAGCAAGATCCACGATGAGCGCCCGGGTTCTGGTCGGAGTTAAACGGGTCATTGACTATGCTGTCAAGATCCGAGTCAGGCCGGACCACACAGGAGTGGTTACAGACGGGGTCAAGCATTCGATGAACCCCTTCTGTGAGATTGCGGTGGAGGAGGCCGTCAGACTCAAGGAGAAGAAGCTTGTTAAGGAGATTGTGGCCGTCAGCTGTGGTCCTCAGCAAGTTCAGGAGACGATCCGGACCGCTCTGGCCATGGGTGCGGACCGCGGCATACATGTGGAGGTGTCTGGAAAGGACTACGACACGCTTGGTCCGCTGCAGGTCTCCAAGATTATGGCTGCTCTCGCTAAGAAAGAAGAAGCGGATCTGATTATTCTCGGTAAACAGGCCATAGATGATGACTGCAATCAAACTGGACAGATGACGGCAGCCCTGTTGGACTGGCCGCAGGGAACTTTTGCGTCTGAGTTGACCTTAGAAGGAGACATGCTGAAGGTGGTGAGAGAAATTGATGGTGGATTGGAGACCATTAAGATCAAAATGCCAGCTGTGGTGACCGCTGACCTCCGTCTCAACACTCCCAGATACGCCACGCTGCCCAACATCATGGTACAGTAATGCAATACTGCACTTCACTGCACACCCATAGGGACTAAAGCACATTTTTTGCACTAGTGGCAATGCCAAGATCATGGGTTCAGTTTCCAGGGAATGCATGAACTAATCTAATGCATACCTTGAATGCAATTTAAGTTGCTTTGGATAATATGTCATTTTAATTTTTGTCGTAATAACGAGATATTACGTCGTTAAAACGACATCTTGTTATAACGAGATATGTCATTAAA
>TU339493
CTAGACTCTTGTGCTGAAGTTCACTCATGCTCTCGGTGATCCGTCGAGCAGAGCAAGATCCACGATGAGCGCCCGGGTTCTGGTCGGAGTTAAACGGGTCATTGACTATGCTGTCAAGATCCGAGTCAGGCCGGACCACACAGGAGTGGTTACAGACGGGGTCAAGCATTCGATGAACCCCTTCTGTGAGATTGCGGTGGAGGAGGCCGTCAGACTCAAGGAGAAGAAGCTTGTTAAGGAGATTGTGGCCGTCAGCTGTGGTCCTCAGCAAGTTCAGGAGACGATCCGGACCGCTCTGGCCATGGGTGCGGACCGCGGCATACATGTGGAGGTGTCTGGAAAGGACTACGACACGCTTGGTCCGCTGCAGGTCTCCAAGATTATGGCTGCTCTCGCTAAGAAAGAAGAAGCGGATCTGATTATTCTCGGTAAACAGGCCATAGATGATGACTGCAATCAAACTGGACAGATGACGGCAGCCCTGTTGGACTGGCCGCAGGGAACTTTTGCGTCTGAGTTGACCTTAGAAGGAGACATGCTGAAGGTGGTGAGAGAAATTGATGGTGGATTGGAGACCATTAAGATCAAAATGCCAGCTGTGGTGACCGCTGACCTCCGTCTCAACACTCCCAGATACGCCACGCTGCCCAACATCATG

Function

symbol description
etfb Predicted to enable electron transfer activity. Predicted to be located in mitochondrial matrix. Human ortholog(s) of this gene implicated in multiple acyl-CoA dehydrogenase deficiency. Orthologous to human ETFB (electron transfer flavoprotein subunit beta).

GO:

id name namespace
GO:0070062 extracellular exosome cellular_component

KEGG:

id description
K03521 fixA, etfB; electron transfer flavoprotein beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000086_00587995_00596565.mRNA False 1007 mRNA 0.49 5 587765 596739
TU339493 True 658 TUCP 0.54 5 588004 596629

Neighbor

gene id symbol gene type direction distance location
CI01000086_00582697_00586449 VSIG10L coding downstream 1316 582697 ~ 586449 (-)
CI01000086_00573050_00574400 LIM2, LIM2.4, MGC84384, LIM2.L, LIM2.5 coding downstream 13365 572965 ~ 574400 (-)
CI01000086_00544490_00561333 NEK10 coding downstream 23581 544150 ~ 564184 (-)
CI01000086_00519578_00523117 NA coding downstream 63288 519490 ~ 524477 (-)
CI01000086_00394709_00423259 NA coding downstream 164506 393499 ~ 423259 (-)
CI01000086_00935341_00936321 NA coding upstream 338313 935052 ~ 939188 (-)
CI01000086_00949574_00963179 NA coding upstream 351287 948026 ~ 963260 (-)
CI01000086_00978789_00999074 NA coding upstream 381801 978540 ~ 999740 (-)
CI01000086_01005334_01006342 NA coding upstream 407845 1004584 ~ 1006342 (-)
CI01000086_01069219_01094068 AGO3, EIF2C3, I2C3 coding upstream 472268 1061523 ~ 1094251 (-)
G298888 NA non-coding downstream 178516 407738 ~ 409249 (-)
G298990 NA non-coding downstream 261193 326346 ~ 326572 (-)
G298988 NA non-coding downstream 261969 325579 ~ 325796 (-)
G298887 NA non-coding downstream 330293 256348 ~ 257472 (-)
G299049 NA non-coding upstream 32982 629721 ~ 632326 (-)
G299096 NA non-coding upstream 97357 694096 ~ 726393 (-)
G299218 NA non-coding upstream 247001 843740 ~ 844179 (-)
G299221 NA non-coding upstream 256865 853604 ~ 876168 (-)
G299266 NA non-coding upstream 405526 1002265 ~ 1002619 (-)
G298872 NA other downstream 51455 535023 ~ 536310 (-)
G299173 NA other upstream 168878 765617 ~ 767879 (-)
G299107 NA other upstream 479407 1126738 ~ 1126798 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 other upstream 662275 1257926 ~ 1260025 (-)
G299528 NA other upstream 1071467 1668206 ~ 1695177 (-)
CI01000086_01852638_01897719 UBR5 other upstream 1297175 1852146 ~ 1897719 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location