CI01000086_01852638_01897719 (UBR5)


Basic Information

Item Value
gene id CI01000086_01852638_01897719
gene name UBR5
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000086
NCBI id null
chromosome length 2920448
location 1852146 ~ 1897719 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000086_01852638_01897719.mRNA
GCTCCGTGAAGTGTCGGAAAAGCTCAACAAATACAACTGTAACAGTCATCCACACCTTATTCCATTGGAGCAGGCCAAACTTAAGCAGTGTGTGGTTGGACCAAATCATGCTGGATTTCTCCTTGAGGATGGACGTATCTGCAGGATAAGCTTTGCCGTCCAGCCCGACCGCCTGGAGCTTGGCAAGCCCGATGGCAATGATGGTTCAAAGTTGAGCAGTGTCTCAGGGGCAGGAAGGAGCTCCAGGCCAGGCAGGACTAGTGATCCGCCCTGGTTCCTGTCTGGTTCTGACACACTGGGCAGACTGGCAGGCAACACCCTTGGAGATAGAGGCTCCGGCTTGCTGGGCAGTCAGCCACAGCCTGTAATTCCAGCCTCTGTCATCCCAGAGGAGCTCATCTCTCAGCGAGACTCGGAACTGCTCCGCGAGCGTGAGTCGGTCCTGAGGTTGCGCGAGAGGAGGTGGCTGGATGGAGCCTCCTTCGATGCGGAGCGTGGCTCCACCAGCCGCGAGGGAGAACCAAGCCTTGACAAGAAGAGTGTGCCGCTGCAGAGCCCTGTCACTCTGGGGGAAGAGCTCCAGTGGTGGCCTGATAAGGACTATGTAACAAAGTTTGTCAGCATTGGGGCTTTGTACTCGGAACTGATTGCTGTCAGTACCAAAGGAGAACTCTACCAGTGGAAGTGGAATGAGCCTGAACCTTACAGAAATGCACAAAATCCTTCTATACATCACCCCCGTGTCCCTTTCCTTGGCTTGACCAATGAAAAGATCACCCACCTGTCTGCCAACAGTATCCGAGCAACTGTGGCCACCGAGAGTAACAAGGTGGCGACATGGGTGGATGAAACTCTGAGCACTGTTGCTGCTAAACTAGAGCATGGAGCACAAACGTTCCCAGAGCTGCAGGGAGAGCGCATTGTCTCTCTGCACTGCTGTGCCCTGTATACCTGCGCTCAGCTGGAGAGCAGCCTTTACTGGTGGGGTGTTGTGCCTTTTAGTCAGCGGAAAAAGATGCTTGAAAAGGCCAGAGCCAAGAACAAGAAGCCAAAGTCCAGTGCAGGCATCTCTTCTATACCTAACATCACAGTAGGAACTCAGGTGAAGAAACATGATGTGGTGGAGGTGTGCCTGAGGAATAACCCTCTATATCACGCTGGTGCCGTGGCCTTCTCCGTAAACGCGGGGATCCCTAAAGTGGGCGTCCTGCTGGAGTCCGTGTGGAACATGAACGACAGCTGCCGCTTCCAGCTCCGCTCACCCGAGAGCCTGAAAAACATGGAAAAGAACACCAAGACACAGGAGATCAAGACTGAGAGCAAGCCAGAGCTGGTGAAGACGGAAATGGGCCCTCCGCCCTCACCAGCGTCCACATGCAGTGACACTTCCTCCATCGCTAGCAGTGCTTCTCTGCCCTATAAGCGAAGGCGCTCAACACCGGCTCCAAAAGAAGAGGAGAAAGTGAATGAGGAGCAGTGGCCTCTACGAGAGGTCGTTTTCGTGGAGGACGTTAAAAACGTCCCTGTGGGAAAGGTGCTAAAAGTCGATGGTGCATATGTTGCTGTGAAATTTCCAGGGACGTCGAGCAGCGTGAGCAGCCAGAGCGCAGCTCCCACTGACTCTGACCCCTCCTCACTGCTGCAAGACTGTCGACTGCTCAGAATAGATGAGCTACAGGTTGTTAAAACTGGTGGAACACCAAAAGTTCCAGACTGTTTTCAGCGCACACTTAAAAAACTTTGTATCCCAGAAAAAGCTGAAATTTTAGCTGTGAATGTTGACTCCAAAGGAGTTCATGCTGTGCTGAAAACAGGCAGCTGGGTACGGTACTGTATCTTTGATTTGGCCACCGGCAAAGCCGAGCAGGAGAATCACTTCCCTACCAGTAACCTGGCCTTTCTCGGCCAGAGTGAGCGTAATGTGGCCATCTTCACTGCTGGCCAGGAGAGTCCCATCATTTTGAGGGATGGTAACGGCACCATTTATCCCATGGCTAAAGACTGTATGGGTGGAATACGTGACCCTGATTGGCTAGACTTGCCGCCTATTGCCAGTCTAGGCATGGGAGTTCACTCGCTTGCCAACCTTCCCACTAACTCCACAATCAAAAAGAAGGCAGCCATCATCATCATGGCTGTGGAGAAGCAGACGTTGATGCAGCACGTGCTGCGCTGTGATTATGAGGCATGCAGGCAATACCTGATTAGTCTGGAGCAAGCAATGCTGCTGGAGCAGAACCCTCACGCTCTGGACGTTCTGCTGGGTCACCGCTGTGACGGCAACCGCAACGTCCTCCACGCCTGCGTCTCCGTCTGCTTCCCTGTCAGCAACAAGGAAACCAAGGAGGAGGAAGAAGCAGAGCGGTCTGAAAGGAACACGTTCGCTGAGAGGCTATCTGCAGTTGAGGCCATTGCCAATGCCATTTCAGTGGTATCCAGCAACAGCTCCGGGAATCGCACAGGATCATCCAGCAGCCGGGGGTTTGGGCCGTCACGAATCCGGCCCTTCCTCCAGCGACCACCAAGACCCAGTTTCACCCCCTATTGCTCCTCCCAGCTGGGTACCAGACCCTCCACCAATGGACCCTGTGGGCTCCCTTACCACTGCTTCCACAGGCACCAGCCAGGGACCCAGCACTTCCACCATCCCAGGCTGAAGAGAACATCTCCCACCGCATACTGTGACTGCTGGGAGAAGTGTAAATGCAAAACTCTTATCGCGGGCCAGAAAGCAGCTCGTTTGGATCTGCTCTACAGGCTGCTGACCACCACTAATCTGGTTACCACTCCTAACAGCAGGGGAGAGCACATCTTGCTGTTTCTGGTGCAGACTGTTGCAAGGCAGAGTGTGGAACACTGCCAGTATCGACCACCTCGCATCCGAGAGGACAGGAACCGGAAGGCTGCCAGCGCTGAAGACTCGGATATGCCAGATCATGACCTGGAGCCTCCACGCTTTGCCCAGCTGGCTCTAGAGCGCGTGTTGCAGGACTGGAACGCACTGAAGTCCATGATAATGTTTGGCTCTCAGGAAAACAAAGACCCACTAAGCGCCAGCAGCAGAATCGCTCACCTTTTACCGGAGGAGCAGATGTACCTGAACCAGCAGAGCGGCACCATCAGGCTGGACTGTTTTACACATTGCCTCATTGTCAAGTGTGCACCAGACATCACTTTCATTGACACTCTGTTAGGGACCCTGGTGAAGGAGCTACAGAATAAATACACCCCCGGCCGCAGAGAGGAGGCCATCAATGTCACACGGAGGTTCTTGCGCTCTGTGGCCCGAGTGTTTGTCATCCTCAGTGTGGAGATGGCATCGTCCAAGAAGAAAAACAACTTCATCCCTCAGCCCATCGGGAAGTGCAGGCGTGTTTTCCAGGCGCTGTTGCCTTATGCAGTGGAAGAGCTCTGTAATGTGGCTGAGTCCCTGATTGTGCCGGTGCGCATGGGTATCGCTCGCCCTACAGCGCCCTTCACTCTGGCCAGTACCAGCATCGATGCTGTACAGGGCAGTGAGGAGCTCTTCTCTGTGGAGCCTTTGCCACCACGACCCTCCCCGGATCAGTCCAGCAGCTCCAGTCAGTCAGCCTCTTCATACATCATCAGGAACCCCCAGCCTCGCCGCAGCAGCCAGTCCCAGACGGCCCGTGGCCGCGACGAAGAGCAGGATGATATTGTTTCTGCTGACGTAGAAGAGGTAGAGGTGGTGGAAGGAGTTGCAGGTGAGGAGGATCACCATGATGACCAGGAGGAGCAGGGGGAGGAGAACGCAGAGGCCGAAGGACAGCATGATGAACACGATGAAGATGGCAGTGACATGGAGCTGGATTTGTTGGCTGCTGCTGAGACTGAGAGTGACAGTGAGAGTAACCATAGCAACCAGGACAATGCAAGTGGCCGCAGAAGCGTTGTGACTGCCGCCACCGCTGGATCTGAAGCAGGTGCTAGCAGCGTTCCTGCTTTCTTCTCTGAGGACGACTCTCAGTCGAATGACTCCAGTGACTCGGACAGCAGCAGCAGTCAGAGTGACGACGTGGATCAGGAGACTTTCCTGTTAGATGAGCCCCTGGAGAGAACAACGGGCTCGGCACACGCCAACAGTGCGGCCCAGGCACCGCGGTCCATGCAGTGGGCTGTTCGCACTACACCCAGCCAGCGCTCTGCTGGCGGTGCCCCATCCAGCTCATCCACACCTGCTGCGAGCTCCACGGGCCTCATCTACATCGACCCTTCAAACCTGCGACGGAGCAGCGCCATCAGCACCAGCGCAGCAGCTGCCGCCGCAGCCCTGGAGGCCAGTAACTCTAGCAGCTACCTGACGTCCGCCAGCAGCCTGGCTCGAGCTTATAGCATCGTCATCCGGCAGATCTCTGACCTCATGAGCCTCATACCCAAATACAACCACCTGGTCTACTCGCAGTATCCCGCTGCGGTCAAACTCACCTATCAGGATGCCGTCAATCTGCAGAACTTTGTGGAGGATAAGTTGATCCCCACCTGGAACTGGATGGTGTCCATCATGGATTCCACTGAAGCGCAGCTACGGTACGGCTCAGCTCTGTCATCAGCCGGGGATCCTGGTCACCCCAGCCACCCGCTGCACGCTTCACAACACACAGGCCGCAGGGAGCGCATGACTGCACGAGAGGAGGCCAGTCTTCGTACACTTGAAGGTCGAAGGCGTGCCGCAACACTTTTGACTGCTCGTCAGGGGATGATGTCAGCACGAGGAGACTTCCTGAACTACGCCCTGTCTCTGATGCGTTCCCATAATGACGAGCATTCAGACGTTCTGCCTGTGCTGGATGTGTGTTCACTCAAACACGTGGCCTACGTCTTCCAGGCCCTCATCTACTGGATTAAAGCCATGAATCTACAGACGACACTCGACACCACTCAGATTGACAGGAAGAGGAATCGTGAACTGCTTGAACTCGGCCTGGACAATGAGGACTCTGAGCACGAGAATGATGAGGACACCAATCAGAGCTCCACCCTGCAGGATAAGGATGAGGAGCCGGTACCTGCTGAGACTGGACAGCACCATCCGTTTTTCCGCCGCTCTGACTCCATGACCTTCCTGGGATGCATCCCTCCCAACCCTTTCGAAGTACCTCTCGCTGAGGCCATTCCACTGGCTGACCAGCCACATCTCCTGCAGCCCAATGCCAGAAAGGAGGACTTGTTTGGACGGCCAAGTCAGGGTCTCTATTCATCCTCGTACATGGCCAGTAAGGGCCTCACGGATCTGACTGTGGACATGAATTGCTTGCAGATTCTACCCACAAAGATGTCGTATTCGGCAAACATGAAGAACGTGATGAGTATGGAGTCTCGGCAGAGGGGTGGCGAGGAGCAGCCGACTGCGGAGCAGGACATGGATGCATCTAAACCAGGCCCTTCACCCCATGATCTGGCAGCCCAGTTAAAGAGCAGCCTCCTTGCAGAGATTGGTTTGACAGAGAGCGATGGCCCGCCCCTTCCCACATTTATTCCACACTGTAGTTTTATGGGGATGGTGATCTCTCATGACATGCTGCTGGGCCGCTGGCGGCTTTCTCTGGAGCTGTTTGGCCGTGTCTTCATGGAGGACGTGGGAGCAGAACCGGGATCTATCCTGACTGAACTGGGTGGTTTTGAGGTGAAGGAGTCCAAGTTTCGGCGTGAGATGGAAAAGCTGAGGAACCTGCAGTCACGTGATCTGGCCCTGGAGGTGGACCGTGACCGAGAGCAGCTCATCCAGCAGACCATGCGGCAGCTCAATGCCCACTTCGGCCGTCGCTGCACCACTACGCCCATGGCTGTGCATCGAGTGAAAGTGACTTTCAAGGATGAACCAGGAGAGGGCAGCGGAGTGGCACGGAGCTTTTACACGGCTATCGCACAGGCTTTCCTGTCCAATGACAAGCTGCCCAATCTGGACTGTGTACAGAGCGTCAGCAAGGGAATGCAGGCTAGCAATCTTATGCAGCGGCTGAGGAACCGAGACCGTGAGCGTGAGAGGAGGAGCGGAGGACTGAGAGCTGCATCCAGACGAGACCGTGACAGGGACTCAAGGAGACAGCTGTCAATTGACACACGGCCGTTCAGACCCGCATCCGAAGGGAACCCTAGTGATGAACCGGAGCCGCTGCCGGCTCACAGACAGGCTCTAGGAGAGAGACTGTACCCACGAGTGCACGCCATGCAGCCGGCATTTGCCAGTAAAATCACAGGGATGCTGTTGGAGCTCTCTCCCGCTCAGTTGCTGCTGCTCCTGGCCAGTGAAGACTCACTCAGAGCTCGTGTGGAAGAAGCCATGGAGCTCCTCATAACTCACGGAAGGGAAAATGGTGCCGACAGTATACTGGACCTTGGCCTTCTTGACACTCCTGAAAAAGCGCAAGAGAACCGAAAGAGGCACGGTTCCACCCGCAGCGTGGTTGACATGGAGCTGGACGACCCTGATGACGGGGATGATAATGCACCTCTCTTTTATCAACCCGGCAAGAGGGGCTTCTACTCGCCCCGTCCAGGCAAGAACACTGAAGCCAGGCTCAACTGCTTCCGTAACATCGGCAGGATACTTGGGTTATGTCTGTTACAGAATGAACTTTGCCCCATCACACTCAACAGACATGTCATCAAGGTGTTGCTCGGCAGGAAGGTGAACTGGCACGACTTCGCTTTCTTTGACCCGGTGATGTACGAGAGCTTGCGGCAGCTGATTCGACACTCCCAAACCGAGGAGGCAGAGGCTGTGTTTGCGGCGATGGACCTTGCCTTCGCCATTGACCTCTGCAAGGAGGAAGGAGCTGGACAGGTGGAGCTCCTGGCCGGTGGGGTCAACATGCCTGTGACTCCTCTGAACGTGTACGAGTATGTGAGGAGATACGCAGAGCACAGGATGCTGGTGGTGGCAGAACAGCCTTTGCATGCCATGCGGAAGGGCCTACTGGATGTGCTTCCAAAGAATGCTCTGGAGGACCTGACGGCAGAGGACTTCAGACTGCTGGTCAACGGCTGTGGAGAGATATTGTCACTGCAACTGCGTATTATCATAAACATATCGAAGCTGGAGTCTTTAATCTTTCTAACGATGCTCAGTTTGTCCAGATCAAGTGAGAATGCGGAGAAGCTGCTGCAGTTCAAACGCTGGTTTTGGTCCATCGTTGAGAAGATGAGTATGACGGAGAGGCAGGACCTGGTATATTTCTGGACGTCCAGCCCGTCCCTGCCGGCTAGTGAAGAAGGTTTCCAGCCCATGCCCTCCATCACCATCCGCCCGCCAGACGACCAGCACCTGCCCACCGCCAACACCTGCATCTCTCGCCTTTATGTGCCACTTTACTCTTCCAAACAGATTCTCAAACAGAAACTTTTACTAGCCATCAAGACCAAGAATTTCGGTTTTGTGTAGTTGAACGAAACTCGTTTAATTGTTGTGTAATATTCTAGTTCCATTTTTGTAGATTTATTTTTTGTCTATACAATTTTATGAAATTTAAAGTGCTGTCGCATCCCCGGCAGTTGTTTTTTGGTCTGCGTTGCAAACGTGGACGGCTTGTTCTTATTTTGTTTTTGTTTTTTTATTTCCGTTATCCGAGTATAACGCAACATTCCTGCATTGGCTTTTGTAAAGTTGAAGCCTGCAGCTCCATTGGCTTGAACTGTAACTTCCCGTGACTTTGGCCTGACGGTAAACTGTCCGCCAAACCCCAGCCAAAGATGACAGCAGGAGTATTTAAAGAAAAAGGAAGATTACACTGTGATTTGATTATTTTCTTTTTTTTTTTTTTCTTTCTTTTTTCCTGCCCTAATCATAAATATTACTATCACTGAGAGTTCACTGCTGCCTTTGTGGAAAGTCATTTTTTCTTGTATAGAGGGAGTAGGGAATTTCAAAAATAAA

Function

symbol description
ubr5 Predicted to enable several functions, including ubiquitin binding activity; ubiquitin-protein transferase activity; and zinc ion binding activity. Predicted to be involved in several processes, including negative regulation of histone H2A K63-linked ubiquitination; protein polyubiquitination; and regulation of double-strand break repair. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in invasive ductal carcinoma. Orthologous to human UBR5 (ubiquitin protein ligase E3 component n-recognin 5).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10593 EDD1, UBR5; E3 ubiquitin-protein ligase EDD1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000086_01852638_01897719.mRNA False 7894 mRNA 0.54 52 1852146 1897719

Neighbor

gene id symbol gene type direction distance location
CI01000086_01670242_01672517 NA coding downstream 177650 1669788 ~ 1674496 (-)
CI01000086_01313364_01320865 NA coding downstream 530132 1313022 ~ 1322014 (-)
CI01000086_01296658_01297947 NA coding downstream 554087 1295830 ~ 1298059 (-)
CI01000086_01257926_01260025 SERPINB1L4, SERPINB14 coding downstream 592121 1257926 ~ 1260025 (-)
CI01000086_01237966_01253245 NA coding downstream 598858 1237911 ~ 1253288 (-)
CI01000086_01915013_01921794 AZIN1A coding upstream 17294 1915013 ~ 1921794 (-)
CI01000086_01948087_01983560 SPIRE1 coding upstream 50288 1948007 ~ 1983560 (-)
CI01000086_01994840_02008387 TPPP coding upstream 96876 1994595 ~ 2008387 (-)
CI01000086_02018950_02030464 NA coding upstream 121101 2018820 ~ 2030525 (-)
CI01000086_02032793_02044182 BRD9 coding upstream 134993 2032712 ~ 2044182 (-)
G299478 NA non-coding downstream 10876 1806086 ~ 1841270 (-)
G299560 NA non-coding downstream 48254 1802861 ~ 1803892 (-)
G299529 NA non-coding downstream 157237 1668012 ~ 1694909 (-)
G299527 NA non-coding downstream 184550 1667350 ~ 1667596 (-)
G299522 NA non-coding downstream 198546 1653336 ~ 1653600 (-)
G299493 NA non-coding upstream 13959 1911678 ~ 1912740 (-)
G299489 NA non-coding upstream 28949 1926668 ~ 1975954 (-)
G299494 NA non-coding upstream 91307 1989026 ~ 2004100 (-)
G299581 NA non-coding upstream 114141 2011860 ~ 2076479 (-)
G299488 NA non-coding upstream 155588 2053307 ~ 2054269 (-)
G299528 NA other downstream 156969 1668206 ~ 1695177 (-)
G299107 NA other downstream 725348 1126738 ~ 1126798 (-)
G299173 NA other downstream 1084267 765617 ~ 767879 (-)
CI01000086_00587995_00596565 BRAFLDRAFT_115002, ETFB, ETFB.L other downstream 1255517 587765 ~ 596739 (-)
CI01000086_02366362_02373059 SLC6A20 other upstream 466612 2364331 ~ 2373059 (-)
G299598 NA other upstream 967963 2865682 ~ 2868103 (-)
G299571 NA non-coding downstream 204 1893007 ~ 1893710 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002686 ubr5,LOC102786672 coding CM030136.1 CM030136.1 26395882 ~ 26452474 (-)