XLOC_010832 (kpna5)


Basic Information

Item Value
gene id XLOC_010832
gene name kpna5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32167430 ~ 32184460 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021198
TCCAGTCGACGCCATATTGCCCTCAGCTGGAGGAACTCGGGAGGGTCTTGTGAGAAATTTAAAAACACACGGCCAGTATTTCTCTCTCCAGTCTACAACAAATGGACGCAATGGCAAGCCCAGGCAAAGATAACTATCGAATGAAGAGCTACAAGAATAAAGCCCTGAACCCCCAGGAAATGCGAAGACGGAGAGAGGAAGAAGGGATACAGCTCCGTAAACAGAAGAGGGAGGAGCAGCTGTTCAAGAGGAGGAATGTGTCTCTACCACCTGGTGATGAGTCCATGCTTGAATGCCCCATTCAGGACCCTGATGTCAGCTCCACTGTACCTGTATCAGGTGAAGGAGTCATAACCCAAGACGTGATTCAGATGATCTTCTCTGAGGATCCAGACCAGCAGCTAATAGCCACTCAGAAGTTCAGAAAGTTACTCTCTAAAGAGCCCAATCCTCCCATTGATGAGGTCATCGGCACACCTGGTGTTGTCAACCGATTTGTTGAATTCCTAAGAAGGAGTGATAACTGCACACTGCAGTTTGAAGCTGCGTGGGCCCTGACCAACATTGCCTCAGGGACCTTCCAACACACCAAGGTGGTCATTGAGACGGGAGCTGTGCCCATTTTTATAGAGCTGCTCAACTCTGAGTACGAGGATGTACAAGAGCagGCCGTGTGGGCGTTAGGAAATATTGCTGGCGATAACGCAGAATGCAGAGATTACGTCCTCAACTGTGGCATTTTGCCCTCTCTTCAGCAGTTGCTTGCAAAGTCAAATCGTCTCACTACCACCCGAAACGCAGTGTGGGCCCTGTCCAATCTGTGCAGAGGGAAAAATCCCCCTCCGGACTTCGCAAAGGTGTCACCCTGCCTTAGCGTGCTCTCCAGATTGCTCTTTAGCAGCGATCCTGACGTCCTTGCAGATGCTTGCTGGGCTCTTTCATACCTGTCAGACGGACCCAATGATAAAATCCAGACAGTCATTGACTCAGGCGTGTGCCGCAGACTGGTGGAGTTGCTCATGCACAGTGATTACAAAGTGGTGTCTCCTGCATTGAGAGCAGTGGGAAACATTGTAACCGGAGATGATATTCAAACCCAGGTGATTCTGAACTGCTCCGCTCTGCCCTGCCTGCTCCATTTACTCAGCAGTCCAAAGGAATCCATCAAAAAAGAGGCCTGTTGGACCGTCTCTAATATTACCGCCGGGAACAGAGCGCAAATCCAGGCAGTGATTGATTCCAACGTATTCCCAGTGCTGATTGAGATACTGCAGAAAGCTGAGTTCCGCACCAGGAAAGAGGCTGCGTGGGCGATAACCAACGCCACTTCAGGAGGCACACCAGAGCAGATCAGATATTTGGTCTCTCTCAACACCATAAAGCCCATGTGTGACCTGCTCACGGTGATGGACTCAAAGATCGTGCAGGTGGCTCTGAACGGCCTCGAAAACATCCTTAGACTGGGAGAACAGGAGTCCAAACAGAACGGAACGGGCATCAACCCTTACTGTGCCCTCATCGAAGAGGCTTACGGCTTGGATAAAATTGAGTTCCTGCAGAGCCACGAGAATCAGGAGATTTACCAGAAGGCCTTTGACCTGATCGAGCACTACTTTGGCGTGGAGGAGGAGGATGCCAGCATCGTTCCGCAGGTGGATCAGAATCAAGGCCAGTACATTTTCCAGCAGTCTGAGGGACCGATGGAAGGCTTTCAGCTCTAACCTTCATCCGTGCTCTATTGGCCAAGCATCCTCCATCCTGCCTGGggtctcctcttcctcctccgcAGCACAGGTCTCCAGCTCTACAGACCAAGACACTCACAGCAGGGAAGACTCCTGCGCACCCCAAACCGACCCACTAAATCTTCCATTTCCATCCAGCCCCATCTTTCTAGCTCCTTTATCAAGGCAGATCATACAGAAAGAGGGCAAAGCTGTAGTCGAAGTCCTGTTGTGACATACAAAAAGCATCTtatcattgttgttatttttgttcttATTAGGCACTGGTGTCCTGATTACTCCATATCCCTTAAGAAATGTGAAACTACCTCTTCAATCAGAAAACGAAGTGTGTGACAGACACCCAGCCTTTAGCTCCGACAGTTCTCTGCTCTTGTGAAGTAAATGCTTCTATGCAAACAGTTGTGTGTTCCTGCGTGGCAGAATTCACAAGGTCTAATGTACTCTTTGGCCAGACAGAGTAATGTATTTGCATTGATACATTTGCGTTTGGATGAATTCCACGACTTTGTGTGCAAACGCGCCCATCGTTCATGTCGCGTCATGTTTGTTCACAGTGTATCCTGAGGGCATGTCATGCCTAATTACACTATTTATTCTGACGTTTTTGACCTGGGAGATTCAGAGCCGTATTTATTGTGCTTTTTGGAAGGAATCGGTCCGTGGTGCTCGACCAGACCTCCTCCTTTCAGCGCCCGCTTTGCTAATGCTGTTAAAGCATTAAAAGCGTTGCATGCAATTATTTAAGTGTGGTCATGTGATCACTAAGATGCAGTTGTTTGTATGTATGCATATCATTGAgggttgtttttttctctcatctCACCTGAAGGTGTTTCTTTTTGTGCGGACTGGCtttaatctgatttatttaatgaTGGCATTAGTGTTgagatgtagtcaaatgtgtatattatatatacattgaGGGTAGGAGGAGAAGGTTTTTCAGTGAAATGGTCTTGGTGTGCAGTGAAATAGTTGTGTAAGGAAAGCGTCTTTCGTTACATTTGTTCATTCAGAGAGCTTTTCCTCATATGTCCCCACTAGCGCTCGCAAATCTTTTCCTTTAAGGAAATATTTTAATTCTTGTAGTTTGTAATTTCATCTGTTTCTTTATTTTAAGCGCTTCATCTGAATTTACATACATTTGTAATGAAACATGTCTGGCACCTGACACAaagttcttttgtttttttagtgtgtttatttactttgttCAGCCCATGAATTACTTGCacccattgtttttttgtttgtttgattgattgaccCAAATAAGAGTTATAATAAGgaaaattcattatatttacaAAGGAAAGAAATCATTGAGATTGTAAAATGAAACTTTATCAAGCACATTGGATTGTGTATAGTTTTGTAAAATTTCTCATGTTTGTACAATGTTTTCTAAGTTTGGGTTGTTTTTTTCGCATCAGGAGAAACCCATCTGTATTTTAAGTTATCATTGGTACAAACCAACAGTATAGAGGAGATCATTGCTTTCCTCGAGGACAAATGCCGATAATGTGTGAAATGTAGACGAATAAAATATTctgttacacat

Function

symbol description
kpna5 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Orthologous to human KPNA5 (karyopherin subunit alpha 5).

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0006607 NLS-bearing protein import into nucleus biological_process
GO:0015031 protein transport biological_process
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008139 nuclear localization sequence binding molecular_function
GO:0061608 nuclear import signal receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-22 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Orthologous to human KPNA5 (karyopherin subunit alpha 5).

Ensembl:

ensembl_id ENSDARG00000042030

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021198 True 3312 mRNA 0.45 14 32167430 32184460

Neighbor

gene id symbol gene type direction distance location
XLOC_010831 CR854927.2 coding downstream 3635 32152199 ~ 32163795 (-)
XLOC_010830 cnot3a coding downstream 39085 32110195 ~ 32128345 (-)
XLOC_010829 NA coding downstream 117437 32043389 ~ 32049993 (-)
XLOC_010828 CR854927.1 coding downstream 128367 32028079 ~ 32039063 (-)
XLOC_010827 gstk1 coding downstream 153501 32009203 ~ 32013929 (-)
XLOC_010833 rwdd1 coding upstream 13094 32197554 ~ 32204470 (-)
XLOC_010834 calhm5.2 coding upstream 21200 32205660 ~ 32208728 (-)
XLOC_010835 calhm5.1 coding upstream 32092 32216552 ~ 32221312 (-)
XLOC_010836 calhm6 coding upstream 42204 32226664 ~ 32233463 (-)
XLOC_010837 mms22l coding upstream 96740 32281200 ~ 32304780 (-)
XLOC_010626 CR392024.2 misc downstream 11272255 20895112 ~ 20895175 (-)
XLOC_010821 NA non-coding downstream 275398 31882148 ~ 31892032 (-)
XLOC_010820 NA non-coding downstream 285807 31878685 ~ 31881623 (-)
XLOC_010838 NA non-coding upstream 164313 32348773 ~ 32378676 (-)
XLOC_010839 NA non-coding upstream 203116 32387576 ~ 32389474 (-)
XLOC_010840 NA non-coding upstream 373595 32558055 ~ 32559783 (-)
XLOC_010842 CR848729.1 non-coding upstream 389650 32574110 ~ 32574236 (-)
XLOC_010843 NA non-coding upstream 402978 32587438 ~ 32627440 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_09437673_09445306 IMA5, KPNA5 coding CI01000027 null 9436243 ~ 9445548 (-)