XLOC_010833 (rwdd1)


Basic Information

Item Value
gene id XLOC_010833
gene name rwdd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 32197554 ~ 32204470 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021199
CAGATTCAGACATTACTGAAGATCGCAGACCACATCGATGCCGGCCGGGCCTTAGCACGCGTTTCTTCCATGCAGACTCGAATCTATGGACAATTGTGACATAAAATGACAGACTACGGCGAGGAGCAAAGGAATGAACTAGAAGCAATAGAGTCCATCTACCCAGACTCATTTACAGTGCTCTCTGATGCACCCACAAGCTTCACCATCACAGTTACCTCTGACACAGGAGAAAATGAAGAGACGCTGGAGCTGACCCTTAAGTTTACATATGTGGAGAAATATCCAGACGAACCCCCCCTCTGGGAGATCTTCTCACAGGAGAACCTGGAAGATTCAGATGCAGAAGAAATTCTAACACTTTTGAAACAACAGgccgAAGAAAATCTAGGAATGGTGATGATATTCACATTAGTGACCGCTGTGCAGgagaaactaaatgaaataatCGACCAGATCAAAAGCAGACGAGAAGAGGAgaagcaaagaaaacaaaaggagGCCGAAGAAGCTGAGAAGCGAGCTTTCCAAGGCACAGTTGTCACAATTGAGACCTTTTTATCATGGAAAGCCAAATTTGAAGCAGAGATGATAGAACTAAAGAAGAAGAGGCAGAAGGAGGAGGAGCAGTCAGGAAAGAAAAAACTCACAGGAAAACAGCTCTTTGAGACAGACCATAATCTTGACACATCAGATATCCAGTTCTTGGAGGACGGTGGGAACAGTGTGGAAGTGGACGAGTCACTTTTTCAAGAAATGGATGATTTGGATTTGGATGAGGATGACCCAGATTTCGACCCACTGGACTTGGGTAGCGATGAAGACTGAATCCGACGTGAATGATGAAGACGCCAACATCCTCTGTAGCAGCCTTGTGGACCAGGACTTGAGCTCAATTCTACTAAACACAAACTCTTCTGTCACTACCATCTATAATGCAGCGTATTTTATGATAACCTCCAAACATACCGTCATTTGTACAACTATTGCCATTAAAAACCAACGACTTGTTCTCTTA
>TCONS_00021200
CGGCCGGGCCTTAGCACGCGTTTCTTCCATGCAGACTCGAATCTATGGACAATTGTGACATAAAATGACAGACTACGGCGAGGAGCAAAGGAATGAACTAGAAGCAATAGAGTCCATCTACCCAGACTCATTTACAGTGCTCTCTGATGCACCCACAAGCTTCACCATCACAGTTACCTCTGACACAGGAGAAAATGAAGAGACGCTGGAGCTGACCCTTAAGTTTACATATGTGGAGAAATATCCAGACGAACCCCCCCTCTGGGAGATCTTCTCACAGGAGAACCTGGAAGATTCAGATGCAGAAGAAATTCTAACACTTTTGAAACAACAGTGTACGAACTATCCTGATCTATGACATGAAATTCAGGAGACAATGAGAAGATCATTTTAAAGGGATACTTTACCCAACCGATCTATCCTGGAGGCTCTATCTAATGGACATTATTAGTCGGGAATACaccacagccaaaataaatgtaGCCAGTAAAAAAAACTCTA

Function

symbol description
rwdd1 Predicted to be involved in cytoplasmic translation. Predicted to be part of polysome. Orthologous to human RWDD1 (RWD domain containing 1).

GO:

id name namespace
GO:0002181 cytoplasmic translation biological_process
GO:0005844 polysome cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-270 Predicted to be involved in cytoplasmic translation. Predicted to be part of polysome. Orthologous to human RWDD1 (RWD domain containing 1).

Ensembl:

ensembl_id ENSDARG00000015930

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021199 False 1018 mRNA 0.44 7 32197554 32204470
TCONS_00021200 True 501 processed_transcript 0.43 4 32199452 32204429

Neighbor

gene id symbol gene type direction distance location
XLOC_010832 kpna5 coding downstream 13094 32167430 ~ 32184460 (-)
XLOC_010831 CR854927.2 coding downstream 33759 32152199 ~ 32163795 (-)
XLOC_010830 cnot3a coding downstream 69209 32110195 ~ 32128345 (-)
XLOC_010829 NA coding downstream 147561 32043389 ~ 32049993 (-)
XLOC_010828 CR854927.1 coding downstream 158491 32028079 ~ 32039063 (-)
XLOC_010834 calhm5.2 coding upstream 1190 32205660 ~ 32208728 (-)
XLOC_010835 calhm5.1 coding upstream 12082 32216552 ~ 32221312 (-)
XLOC_010836 calhm6 coding upstream 22194 32226664 ~ 32233463 (-)
XLOC_010837 mms22l coding upstream 76730 32281200 ~ 32304780 (-)
XLOC_010838 NA coding upstream 144303 32348773 ~ 32378676 (-)
XLOC_010626 CR392024.2 misc downstream 11302379 20895112 ~ 20895175 (-)
XLOC_010821 NA non-coding downstream 305522 31882148 ~ 31892032 (-)
XLOC_010820 NA non-coding downstream 315931 31878685 ~ 31881623 (-)
XLOC_010839 NA non-coding upstream 183106 32387576 ~ 32389474 (-)
XLOC_010840 NA non-coding upstream 353585 32558055 ~ 32559783 (-)
XLOC_010842 CR848729.1 non-coding upstream 369640 32574110 ~ 32574236 (-)
XLOC_010843 NA non-coding upstream 382968 32587438 ~ 32627440 (-)

Expression


Co-expression Network