CI01000092_02423345_02438711


Basic Information

Item Value
gene id CI01000092_02423345_02438711
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2422989 ~ 2438720 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_02423345_02438711.mRNA
AGTCCTGCCATGGCCAAGAGGGCAGTCTTCACCTTTTACGCCATGGTTGTTATGCATGCCTGGGCAGCACACACCTCTCAGCTGGCTTCCTCCAGTCCTGTTGATGCTCCAGAGGCCATCCCAGAGCCTGCTGCCGGCCCAGAGGCAGTCCCAGAGCCTGCTCCTAAGCCCTCGGACTGCTCCACCATGACTCTTGTCCCCATTCTAAAGGCTGCTGTCAGCTTTATGATGTTCCTCTTTTTCACCCTGGTCCCTGTCTTGCCCAAGCCTGACCTGCTCTGCCTGCCCTATCGGCTTTGCCCTTGCTTCCTACCCTGCCGACTCCACCCAAGCTCCCTGCTCTGGATTCTGGGTGGATTCTGTCACTTTGATTGTGAATCCAGAGAAAATTGGCATCTACATTCTCATTATGTGCCAGCCTCACTGAGGAAAGTCTGTTACCTGTCTGTGCTTGTGGAGGAAATCCCGAAGGAATCATGTGAAGTGTGCTGGAGGCCTAGTGAGATCAAAGAAGACTGGGAAGTATCCATTTATCGGCCCTGCGTCTTTAGCAGCAGAGGCTTTAGAAGTGATTCTGAACTTGAGATGTTCATAACTTCACCCGGGTCTTTTTTTAGTACCCCCAGTTGCAACAGGGCTGGTTGTAACTTTGAGGCTCCCCTGGGTGTGCAGCTGCACACCGGGGCAAAGTCCCATAGCGTCTTGGTCAGACTGGTTGTCTCCAGTCTTTGTCTGTCTTTCCTATGGCCTGTGCATGTGGCAACCTCTCTCCACATCGTGACGAGCCTTTGGTACCATGATTACCTACACTGTAACCCAAAGACACTACTCTTGTCATCAAGCACCTGCTTCCCTACCTGCCTCCCAACCTACAGTCTCCAGCCTGCTGCCTCCTCCATTGCTGCATTCAGTGCTGCCTCCAAGCCTGTTGCCTCCCACACTGCTGCATCCAGTGCTGCCTCCCACACTGCTGCATCCAGTGCTGCCTCCAAGCCTGCTACCTCCCACACTGCTGCATCCAATGCTGCCTCACACACTGGTGCATCCAGTGCTGTCTTCAAGCCTGCTGCCTCCCACACTGTAGCATCCAGTGCTGCCTCCAAGCCTGCTGCCTCCCACACTGCTGCATCCAGTGCTGCCTCCCACACTGCTGCATCCAGTGCTGCCTCCAAGCCTGCTACCTCCCACACTGCTGCATCCAATGCTGCCTCACACACTGGTGCATCCAGTGCTGTCTTCAAGCCTGCTGCCTCCCACACTGTAGCATCCAGTGCTGCCTCCAAGCCTGCTGCCTCCCACACTGCTGCATCCAGTGCTGCCTCCCACACTGCTGCATCCAGTGCTGCCTCCAAGCCTGCTACCTCCCACACTGCTGCATCCAATGCTGCCTCACACACTGGTGCATCCAGTGCTGTCTTCAAGCCTGCTGCCTCCCACACTGTAGCATCCAGTGCTGCCTCCAAGCCTGCTGCCTCCCACACTGCTGCATCCAGTGCTGCCTCCCACACTGCTGCATCCAGTGCTGCCTCCAAGCCTGCTACCTCCCACACTGCTGCATCCAATGCTGCCTCACACACTGGTGCATCCAGTGCTGTCTTCAAGCCTGCTGCCTCCCACACTGTAGCATCCAGTGCTGCCTCCAAGCCTGCTGCCTCCCACACTGCAGCATCCAGTGCTGCATCCCACACTTCTACATCCAGTGCTGCCTCAAAGCCTGCTACCTCCCACACTGCTGCCTCTCAGCCTGCTGCCTCCCAGACTACTTGTATGTATCCATTTTTAACTTCAAGGATAATTAAATTAAATTTGATCATTAGTTCTCTGTTGGTCCATTTAGTGTTACAAGACATCTAGGCAGGCAAATTAGGAGGAAGGCCCTGTAGCAAAATAAGTCCCTATAAATTGTTTACATTTGATCTTGAGCGCCTCAGGCCTGGGCAGATGCTTTAGAGTGAGGTTAGTGACTTCAAGATAGATTTTGTTCACAATTCCATAATAGTCATGAAATTACTTTTTGAAATTTGTCATACTGCCATATACATTAAAGTGTGGAATTATGGAAATTGTTCACATTCTTAAATTTGCTGAAGGTTATCAATGCATAGCTCACTTGCCTGACAAACAGTTATGCAGGGAAGGCATAAAGCAGTAATGTAACGCATTACATTTTAAATTTATGTAATTTGATTACAGTTACTGATGTCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_02423345_02438711.mRNA True 2210 mRNA 0.52 5 2422989 2438720

Neighbor

gene id symbol gene type direction distance location
CI01000092_02408861_02410832 NA coding downstream 11503 2408581 ~ 2411486 (-)
CI01000092_02191463_02196322 NA coding downstream 226419 2191156 ~ 2196570 (-)
CI01000092_02134927_02166170 NA coding downstream 256442 2133818 ~ 2166547 (-)
CI01000092_02072036_02082309 OR128-10 coding downstream 339209 2071728 ~ 2083780 (-)
CI01000092_02055330_02056247 OR128-10 coding downstream 366703 2055017 ~ 2056286 (-)
CI01000092_02463561_02465847 NA coding upstream 24403 2463123 ~ 2466249 (-)
CI01000092_02522204_02531634 ARRB1 coding upstream 83403 2522123 ~ 2531634 (-)
CI01000092_02570666_02599836 NA coding upstream 131476 2570196 ~ 2599836 (-)
CI01000092_02602158_02608405 NA coding upstream 162966 2601686 ~ 2608405 (-)
CI01000092_02616905_02658519 WDR62 coding upstream 178098 2616818 ~ 2658874 (-)
G305040 NA non-coding downstream 16015 2406740 ~ 2406974 (-)
G305033 NA non-coding downstream 17192 2405135 ~ 2405797 (-)
G305032 NA non-coding downstream 33634 2388063 ~ 2389355 (-)
G305025 NA non-coding downstream 104460 2318186 ~ 2318529 (-)
G305024 NA non-coding downstream 104850 2317749 ~ 2318139 (-)
G305053 NA non-coding upstream 2328 2441048 ~ 2441255 (-)
G305056 NA non-coding upstream 9217 2447937 ~ 2448771 (-)
G305068 NA non-coding upstream 38924 2477644 ~ 2477937 (-)
G305069 NA non-coding upstream 39624 2478344 ~ 2478544 (-)
G305736 NA non-coding upstream 41219 2479939 ~ 2480165 (-)
G304459 NA other downstream 1190697 1231900 ~ 1232292 (-)
CI01000092_01086701_01097333 CLRN1 other downstream 1326071 1086404 ~ 1097333 (-)
G304369 NA other downstream 1364069 1058325 ~ 1058920 (-)
G304368 NA other downstream 1367267 1055304 ~ 1055722 (-)
G305772 NA other upstream 285874 2724594 ~ 2724944 (-)
G306014 NA other upstream 1239154 3677874 ~ 3679488 (-)
G306679 NA other upstream 2057694 4496414 ~ 4505953 (-)
G306792 NA other upstream 2365675 4804395 ~ 4865973 (-)
G306902 NA other upstream 2714948 5153668 ~ 5154133 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G370711 NA non-coding NC_047620.1 CM018566.1 5134838 ~ 5135130 (-)