RNA id: CI01000092_02423345_02438711.mRNA


Basic Information

Item Value
RNA id CI01000092_02423345_02438711.mRNA
length 2210
RNA type mRNA
GC content 0.52
exon number 5
gene id CI01000092_02423345_02438711
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2422989 ~ 2438720 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCCTGCCATGGCCAAGAGGGCAGTCTTCACCTTTTACGCCATGGTTGTTATGCATGCCTGGGCAGCACACACCTCTCAGCTGGCTTCCTCCAGTCCTGTTGATGCTCCAGAGGCCATCCCAGAGCCTGCTGCCGGCCCAGAGGCAGTCCCAGAGCCTGCTCCTAAGCCCTCGGACTGCTCCACCATGACTCTTGTCCCCATTCTAAAGGCTGCTGTCAGCTTTATGATGTTCCTCTTTTTCACCCTGGTCCCTGTCTTGCCCAAGCCTGACCTGCTCTGCCTGCCCTATCGGCTTTGCCCTTGCTTCCTACCCTGCCGACTCCACCCAAGCTCCCTGCTCTGGATTCTGGGTGGATTCTGTCACTTTGATTGTGAATCCAGAGAAAATTGGCATCTACATTCTCATTATGTGCCAGCCTCACTGAGGAAAGTCTGTTACCTGTCTGTGCTTGTGGAGGAAATCCCGAAGGAATCATGTGAAGTGTGCTGGAGGCCTAGTGAGATCAAAGAAGACTGGGAAGTATCCATTTATCGGCCCTGCGTCTTTAGCAGCAGAGGCTTTAGAAGTGATTCTGAACTTGAGATGTTCATAACTTCACCCGGGTCTTTTTTTAGTACCCCCAGTTGCAACAGGGCTGGTTGTAACTTTGAGGCTCCCCTGGGTGTGCAGCTGCACACCGGGGCAAAGTCCCATAGCGTCTTGGTCAGACTGGTTGTCTCCAGTCTTTGTCTGTCTTTCCTATGGCCTGTGCATGTGGCAACCTCTCTCCACATCGTGACGAGCCTTTGGTACCATGATTACCTACACTGTAACCCAAAGACACTACTCTTGTCATCAAGCACCTGCTTCCCTACCTGCCTCCCAACCTACAGTCTCCAGCCTGCTGCCTCCTCCATTGCTGCATTCAGTGCTGCCTCCAAGCCTGTTGCCTCCCACACTGCTGCATCCAGTGCTGCCTCCCACACTGCTGCATCCAGTGCTGCCTCCAAGCCTGCTACCTCCCACACTGCTGCATCCAATGCTGCCTCACACACTGGTGCATCCAGTGCTGTCTTCAAGCCTGCTGCCTCCCACACTGTAGCATCCAGTGCTGCCTCCAAGCCTGCTGCCTCCCACACTGCTGCATCCAGTGCTGCCTCCCACACTGCTGCATCCAGTGCTGCCTCCAAGCCTGCTACCTCCCACACTGCTGCATCCAATGCTGCCTCACACACTGGTGCATCCAGTGCTGTCTTCAAGCCTGCTGCCTCCCACACTGTAGCATCCAGTGCTGCCTCCAAGCCTGCTGCCTCCCACACTGCTGCATCCAGTGCTGCCTCCCACACTGCTGCATCCAGTGCTGCCTCCAAGCCTGCTACCTCCCACACTGCTGCATCCAATGCTGCCTCACACACTGGTGCATCCAGTGCTGTCTTCAAGCCTGCTGCCTCCCACACTGTAGCATCCAGTGCTGCCTCCAAGCCTGCTGCCTCCCACACTGCTGCATCCAGTGCTGCCTCCCACACTGCTGCATCCAGTGCTGCCTCCAAGCCTGCTACCTCCCACACTGCTGCATCCAATGCTGCCTCACACACTGGTGCATCCAGTGCTGTCTTCAAGCCTGCTGCCTCCCACACTGTAGCATCCAGTGCTGCCTCCAAGCCTGCTGCCTCCCACACTGCAGCATCCAGTGCTGCATCCCACACTTCTACATCCAGTGCTGCCTCAAAGCCTGCTACCTCCCACACTGCTGCCTCTCAGCCTGCTGCCTCCCAGACTACTTGTATGTATCCATTTTTAACTTCAAGGATAATTAAATTAAATTTGATCATTAGTTCTCTGTTGGTCCATTTAGTGTTACAAGACATCTAGGCAGGCAAATTAGGAGGAAGGCCCTGTAGCAAAATAAGTCCCTATAAATTGTTTACATTTGATCTTGAGCGCCTCAGGCCTGGGCAGATGCTTTAGAGTGAGGTTAGTGACTTCAAGATAGATTTTGTTCACAATTCCATAATAGTCATGAAATTACTTTTTGAAATTTGTCATACTGCCATATACATTAAAGTGTGGAATTATGGAAATTGTTCACATTCTTAAATTTGCTGAAGGTTATCAATGCATAGCTCACTTGCCTGACAAACAGTTATGCAGGGAAGGCATAAAGCAGTAATGTAACGCATTACATTTTAAATTTATGTAATTTGATTACAGTTACTGATGTCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346585 lncRNA downstream 16015 2406740 ~ 2406974 (-) True G305040
TU346578 lncRNA downstream 17192 2405135 ~ 2405797 (-) True G305033
TU346577 lncRNA downstream 33634 2388063 ~ 2389355 (-) True G305032
TU346563 lncRNA downstream 104460 2318186 ~ 2318529 (-) True G305025
TU346562 lncRNA downstream 104850 2317749 ~ 2318139 (-) True G305024
TU346600 lncRNA upstream 2328 2441048 ~ 2441255 (-) True G305053
TU346605 lncRNA upstream 9217 2447937 ~ 2448656 (-) False G305056
TU346606 lncRNA upstream 9533 2448253 ~ 2448771 (-) True G305056
TU346622 lncRNA upstream 38924 2477644 ~ 2477937 (-) True G305068
TU346623 lncRNA upstream 39624 2478344 ~ 2478544 (-) True G305069
CI01000092_02408861_02410832.mRNA mRNA downstream 11503 2408581 ~ 2411486 (-) True CI01000092_02408861_02410832
CI01000092_02191463_02196322.mRNA mRNA downstream 226419 2191156 ~ 2196570 (-) True CI01000092_02191463_02196322
CI01000092_02134927_02166170.mRNA mRNA downstream 256442 2133818 ~ 2166547 (-) True CI01000092_02134927_02166170
CI01000092_02072036_02082309.mRNA mRNA downstream 339209 2071728 ~ 2083780 (-) True CI01000092_02072036_02082309
CI01000092_02055330_02056247.mRNA mRNA downstream 366703 2055017 ~ 2056286 (-) True CI01000092_02055330_02056247
CI01000092_02463561_02465847.mRNA mRNA upstream 24403 2463123 ~ 2466249 (-) True CI01000092_02463561_02465847
CI01000092_02522204_02531634.mRNA mRNA upstream 83403 2522123 ~ 2531634 (-) True CI01000092_02522204_02531634
CI01000092_02570666_02599836.mRNA mRNA upstream 131476 2570196 ~ 2599836 (-) True CI01000092_02570666_02599836
CI01000092_02602158_02608405.mRNA mRNA upstream 162966 2601686 ~ 2608405 (-) True CI01000092_02602158_02608405
CI01000092_02616905_02658519.mRNA mRNA upstream 178098 2616818 ~ 2658874 (-) True CI01000092_02616905_02658519
TU345950 other downstream 1190697 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 1326071 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 1364069 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 1364125 1058325 ~ 1058864 (-) False G304369
TU347441 other upstream 285874 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 1239154 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 2057694 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 2365675 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 2714948 5153668 ~ 5154133 (-) True G306902

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU439123 True 293 lncRNA 0.33 1 NC_047620.1 5134838 ~ 5135130 (-)