RNA id: TU346606


Basic Information

Item Value
RNA id TU346606
length 519
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G305056
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2447937 ~ 2448771 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAGTACTAGCCTAGGCCAGATATAGGGGCGGCCTGTGAGGGACTCGACATGGAGGCAAGATGGAATCCAAATGCTGGAAGTTTAATAAATATCAGCAAACAAATCCAGTACTAAAGGCAGAGACGTAGTTGATAAGGCAGGCAGAATAATCAGTGACAAGAAATCAGTCCAAACAGGCAACCACAGCAAAAACGATATCCAAAAGGCAAAAATCCAATAAAGCAAGCACAATGGTCAGTAACAAGAAGGCAAGAAAATAGGCAATGAGAAACACTTGGTAAGGCAGTGATAAACTGGCAATACTTCGCAAAGTAGCAGTGGAAATGCATGTCTATTTATACAGGAGAGAGACAGGAAGTAACCAATGAGCAAGAGTCCATGTTAGTATTCAGGAGAGGGCTCCCTCCGGTGGCTGGATGAATAAGTACCAGCCTCATCCATTACAGAACCCCTCCCTCTACGAACATCTCCTGGTGTTCTCCTTCTTGGTCGTGGTGCAGGACGGTTCGGGTGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346600 lncRNA downstream 6998 2441048 ~ 2441255 (-) True G305053
TU346585 lncRNA downstream 41279 2406740 ~ 2406974 (-) True G305040
TU346578 lncRNA downstream 42456 2405135 ~ 2405797 (-) True G305033
TU346577 lncRNA downstream 58898 2388063 ~ 2389355 (-) True G305032
TU346563 lncRNA downstream 129724 2318186 ~ 2318529 (-) True G305025
TU346622 lncRNA upstream 28873 2477644 ~ 2477937 (-) True G305068
TU346623 lncRNA upstream 29573 2478344 ~ 2478544 (-) True G305069
TU347402 lncRNA upstream 31168 2479939 ~ 2480165 (-) True G305736
TU347403 lncRNA upstream 40484 2489255 ~ 2489612 (-) True G305737
TU347436 lncRNA upstream 269231 2718002 ~ 2718204 (-) True G305767
CI01000092_02423345_02438711.mRNA mRNA downstream 9533 2422989 ~ 2438720 (-) True CI01000092_02423345_02438711
CI01000092_02408861_02410832.mRNA mRNA downstream 36767 2408581 ~ 2411486 (-) True CI01000092_02408861_02410832
CI01000092_02191463_02196322.mRNA mRNA downstream 251683 2191156 ~ 2196570 (-) True CI01000092_02191463_02196322
CI01000092_02134927_02166170.mRNA mRNA downstream 281706 2133818 ~ 2166547 (-) True CI01000092_02134927_02166170
CI01000092_02072036_02082309.mRNA mRNA downstream 364473 2071728 ~ 2083780 (-) True CI01000092_02072036_02082309
CI01000092_02463561_02465847.mRNA mRNA upstream 14352 2463123 ~ 2466249 (-) True CI01000092_02463561_02465847
CI01000092_02522204_02531634.mRNA mRNA upstream 73352 2522123 ~ 2531634 (-) True CI01000092_02522204_02531634
CI01000092_02570666_02599836.mRNA mRNA upstream 121425 2570196 ~ 2599836 (-) True CI01000092_02570666_02599836
CI01000092_02602158_02608405.mRNA mRNA upstream 152915 2601686 ~ 2608405 (-) True CI01000092_02602158_02608405
CI01000092_02616905_02658519.mRNA mRNA upstream 168047 2616818 ~ 2658874 (-) True CI01000092_02616905_02658519
TU345950 other downstream 1215961 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 1351335 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 1389333 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 1389389 1058325 ~ 1058864 (-) False G304369
TU347441 other upstream 275823 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 1229103 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 2047643 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 2355624 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 2704897 5153668 ~ 5154133 (-) True G306902

Expression Profile