RNA id: TU346577


Basic Information

Item Value
RNA id TU346577
length 1293
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G305032
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2388063 ~ 2389355 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGTCTGTTAATGTGATGTTGTGTTCGTTGATGAAAGTATCAGACATGAAGTTGCCCGCAGCACCAGAGTCCAGAAGTGCGTGCGTAGTTATGCGTAGATCATTCAGAGTTATTTGTATGGGAATTTTGAGGCAGTTAGTGGAATAAGCGGTGGGAGGTGGAGAACTCACCGCTTTTGGGTTAGACGGAGTGGGTCAAATGGGGCAGTTGATCTTGATGTGACCAGCTTGGCCGCAGTAGAGGCACAGATGAAGTTGTCGTCTCCTCTCGCGTTCCTCTGGGCGAAGCGGAGTGAATCCGAGCTGCATGGGTTCCGAGGGAGGCGTGGTCTGAGCGGACAGCTGAACAGGGCGTCGAGAGCGGAGAAGATTGTCAATGTGTATAGCGAGGTCGATGAATTCGTTGAGCGATCTTCCCTCGTCGCGGCATGCGAGCTCGGCTTGCAGTTCTAGAGACAGCCCCTTTCGAAACAGCAGTTTCAGCGTGTCTTCCACCCAGTTTGTCTGTGCGGCGAGGGTTCGGAAATTTAAAGCATAATCCGCGGCCGTGGTTTTCCCTTGACTCAGCGACAGCAGTAGATCCCCAGCGCTCTTGCCTCCCTCAGGATGTTCGAACACTTCCTTGAAGCTTCGTAGGAAGGCCGAGAAGGTGGGAAACACAGAACCATCCTCTCGCCATACCGCCGTGGCCCAATCCAGCACTCGACCGGTCAACAGGGAGCATACAAAGGAGATTCGACTGGATTCAGTGGGATAGAGAGATGGCTGCTGGTTGACAAAGAGAGAACATTGGAGAAGAAATCCCTTACATTTAGCGGGGTTGCCGTCAAACTTCTCCGGGAGTGCGAGGCGTGGATTCACGGCGGGAGCGGTAGTGAAGGCTTGACTGACGGTGGCTGCAGACGGTGGCGTGGCGGCCTCGGTGGCGTTGAATCGAAGGCCCTGCAGAGTTTTCACCAGCTCCTCGGTAAGGGAAGTCAAACGATTCAATTGATGTTGGTGAACCGTGAGCTGGTTGGCTTGGGCAGACAGCTCGGAGGAAATTTGCATGATCGCTGCTGGATCGCTGTATGGCGAAGTCTTCTGTAATGACGGGTCGGCAGAATGAGGATCCATTTGCAGCTTTATTAAGATAAACACCAACGCAGACAGGGGCAAAGGCAGAGACATAAATAGGGGCAGGCAATGGTCGAGGCAGGCGGCAGACAAACAGAGTAGAGTTACAGGCGATGGTCGAGGCAGGCGGCAAACAAACACAGTCCAAACAGCAGGCAAGGATCAGGGCAGGCGGCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346563 lncRNA downstream 69534 2318186 ~ 2318529 (-) True G305025
TU346562 lncRNA downstream 69924 2317749 ~ 2318139 (-) True G305024
TU346561 lncRNA downstream 70382 2316778 ~ 2317681 (-) True G305023
TU346556 lncRNA downstream 76125 2311706 ~ 2311938 (-) True G305018
TU346555 lncRNA downstream 76383 2311366 ~ 2311680 (-) True G305017
TU346578 lncRNA upstream 15780 2405135 ~ 2405797 (-) True G305033
TU346585 lncRNA upstream 17385 2406740 ~ 2406974 (-) True G305040
TU346600 lncRNA upstream 51693 2441048 ~ 2441255 (-) True G305053
TU346605 lncRNA upstream 58582 2447937 ~ 2448656 (-) False G305056
TU346606 lncRNA upstream 58898 2448253 ~ 2448771 (-) True G305056
CI01000092_02191463_02196322.mRNA mRNA downstream 191493 2191156 ~ 2196570 (-) True CI01000092_02191463_02196322
CI01000092_02134927_02166170.mRNA mRNA downstream 221516 2133818 ~ 2166547 (-) True CI01000092_02134927_02166170
CI01000092_02072036_02082309.mRNA mRNA downstream 304283 2071728 ~ 2083780 (-) True CI01000092_02072036_02082309
CI01000092_02055330_02056247.mRNA mRNA downstream 331777 2055017 ~ 2056286 (-) True CI01000092_02055330_02056247
CI01000092_02043716_02044633.mRNA mRNA downstream 343391 2043391 ~ 2044672 (-) True CI01000092_02043716_02044633
CI01000092_02408861_02410832.mRNA mRNA upstream 19226 2408581 ~ 2411486 (-) True CI01000092_02408861_02410832
CI01000092_02423345_02438711.mRNA mRNA upstream 33634 2422989 ~ 2438720 (-) True CI01000092_02423345_02438711
CI01000092_02463561_02465847.mRNA mRNA upstream 73768 2463123 ~ 2466249 (-) True CI01000092_02463561_02465847
CI01000092_02522204_02531634.mRNA mRNA upstream 132768 2522123 ~ 2531634 (-) True CI01000092_02522204_02531634
CI01000092_02570666_02599836.mRNA mRNA upstream 180841 2570196 ~ 2599836 (-) True CI01000092_02570666_02599836
TU345950 other downstream 1155771 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 1291145 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 1329143 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 1329199 1058325 ~ 1058864 (-) False G304369
TU347441 other upstream 335239 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 1288519 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 2107059 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 2415040 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 2764313 5153668 ~ 5154133 (-) True G306902

Expression Profile