RNA id: TU346561


Basic Information

Item Value
RNA id TU346561
length 904
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G305023
representative True

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 2316778 ~ 2317681 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGAGAAATAGATGTACCCAGGTGGAGTTAAGAGGTTTAAGTTGTAAAAGTCATTGGGCACCTGCCAGGTTTCCGTCAAAAGTAGCATGTCCAGATTTGTCAATGATAATGTCATTTAGCACTAATGCTTTATCAGTTAAAGAGCGAGTGTTCAGTAGCGCACATCGCATATCTGAAGATACAATATTGCAGTGTCCAAAGACGGGATCGAAGCGTAATGGTCTCAGATTTCCAAAGTTGATTACACGATTTTCCTGCTGTATTTTACTAGAAGCACAGATGTTAGATAACCGGAATACTATTTGAAGACGAGCAGTGATAAGTCCGAAGTTTCTTCCGTGAACGGTGTATGTAGCGGGGTCGGCGTAAAATTCCAAGTTGTTCACACCATTTATAAGTGTCCGGAGCCAAGCGGAGAGATCCTTTTAAAGATCTAAGTTGAGCAGAAGAAAATTGCAGAGCCATCTCGAGAGAAGTCACTTTATTAACGTCAGCCAAAAACAGCACAAAAAGACCAAAGAACAAAACCTGCAAATGATTACGCGTCGACATGACCAAAAACCAATGGGACCCACACAACAACTTATCGGTTTACCTATGTTAGCCAGAACCGTATCGAATCCACAATCCACGGAAGGGAAGGCTACCCAACCATACCGAGGATTTACACCACGAAATGATAAAGAGAGTGGAGACTCACTGTATCAGATGTCGTGAAGGATATGGAAAGGAATGGAGAAGGCTGGCAGCCGATCAGTGTGACAGGATCCCGAAAAATGCCAGGTCAGTCATTCAAATCTTATTGAGTGAAAGTCCAGGAAGTAATCCAGATTTGTCAAATCCCAGCAGAAACTTATCCAAAAACGTATCAGCCAGTAAACAAACAAACAGACAGGTAACCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346556 lncRNA downstream 4840 2311706 ~ 2311938 (-) True G305018
TU346555 lncRNA downstream 5098 2311366 ~ 2311680 (-) True G305017
TU346547 lncRNA downstream 16344 2299994 ~ 2300434 (-) True G305009
TU346544 lncRNA downstream 19839 2296717 ~ 2296939 (-) True G305006
TU346540 lncRNA downstream 25715 2290484 ~ 2291063 (-) True G305002
TU346562 lncRNA upstream 68 2317749 ~ 2318139 (-) True G305024
TU346563 lncRNA upstream 505 2318186 ~ 2318529 (-) True G305025
TU346577 lncRNA upstream 70382 2388063 ~ 2389355 (-) True G305032
TU346578 lncRNA upstream 87454 2405135 ~ 2405797 (-) True G305033
TU346585 lncRNA upstream 89059 2406740 ~ 2406974 (-) True G305040
CI01000092_02191463_02196322.mRNA mRNA downstream 120208 2191156 ~ 2196570 (-) True CI01000092_02191463_02196322
CI01000092_02134927_02166170.mRNA mRNA downstream 150231 2133818 ~ 2166547 (-) True CI01000092_02134927_02166170
CI01000092_02072036_02082309.mRNA mRNA downstream 232998 2071728 ~ 2083780 (-) True CI01000092_02072036_02082309
CI01000092_02055330_02056247.mRNA mRNA downstream 260492 2055017 ~ 2056286 (-) True CI01000092_02055330_02056247
CI01000092_02043716_02044633.mRNA mRNA downstream 272106 2043391 ~ 2044672 (-) True CI01000092_02043716_02044633
CI01000092_02408861_02410832.mRNA mRNA upstream 90900 2408581 ~ 2411486 (-) True CI01000092_02408861_02410832
CI01000092_02423345_02438711.mRNA mRNA upstream 105308 2422989 ~ 2438720 (-) True CI01000092_02423345_02438711
CI01000092_02463561_02465847.mRNA mRNA upstream 145442 2463123 ~ 2466249 (-) True CI01000092_02463561_02465847
CI01000092_02522204_02531634.mRNA mRNA upstream 204442 2522123 ~ 2531634 (-) True CI01000092_02522204_02531634
CI01000092_02570666_02599836.mRNA mRNA upstream 252515 2570196 ~ 2599836 (-) True CI01000092_02570666_02599836
TU345950 other downstream 1084486 1231900 ~ 1232292 (-) True G304459
TU345834 other downstream 1219860 1086662 ~ 1096918 (-) True CI01000092_01086701_01097333
TU345840 other downstream 1257858 1058367 ~ 1058920 (-) False G304369
TU345843 other downstream 1257914 1058325 ~ 1058864 (-) False G304369
TU347441 other upstream 406913 2724594 ~ 2724944 (-) True G305772
TU347691 other upstream 1360193 3677874 ~ 3679488 (-) True G306014
TU348466 other upstream 2178733 4496414 ~ 4505953 (-) True G306679
TU348596 other upstream 2486714 4804395 ~ 4865973 (-) True G306792
TU348717 other upstream 2835987 5153668 ~ 5154133 (-) True G306902

Expression Profile