CI01000092_03860647_03862519


Basic Information

Item Value
gene id CI01000092_03860647_03862519
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000092
NCBI id null
chromosome length 5370156
location 3860432 ~ 3863147 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000092_03860647_03862519.mRNA
AGTCTCGTCCCAGACCAGCTACATCAACAGGTAAGCAGCCCGACCTCGGACATGAGAGCCACTCATGATAGGCTTTTGTCAGGAAACAGCTGGACCGTTAGCAAAACAACAAAATTTGTATCAAATTATACTTTTTATACTTTAGTTGATTTTTATTGTTAGAAGTACAAAAAGTAATTGTTTTGGTTTGAAGACTAATGGCGAAGCCTTATTGATAAAATATGATAAATTATTGTAGCCCTTCTACTCCTCGACTGCCTGAAGTCTGCTCAGTTCTCCAGGTCCACCATCAATGTGTCCAAGTTAATCTAAGGATTTTAGATTATGTTGAGAGCTAATCTGGTTGTGAAGTCTTTGTAACTCTGTCTAATCTGGGATGAATTAGAGTCTAGTCTAATAGGCTGACATATGTCGTAGGGTAAACCTTTCCCGAGCAGCCTGAGTAGGCAATAGTTGTAGTATCAATCTAGAACAATCACAGTACTAAAAGGTTTAATAACATTAGAATGAATCATGCTGAATTGTGTCCACTCTCCCTTTGGTTAAAAATCTCAAACCCATCCATTCATTGTGAGCTGCTTCAATTATATTAACAATATCTGATGTTTGTTTTTGACCCAGATCCATGATGAGGTTCGTAGCCCTCGCCCTCACTGTTTTGCTGGCAGGTTGCCAGGCCCGTTTCCTGCAGGACGAAGCACCGTCACATCTGGATCATGTGAAGTCTGTGCTCCAGGTTTATGCAGATCAGTTAAAGCAGTCTGCACACAAGTCCCTCACTCACCTCGATGACACAGAGTTCAAAGACTACAAGGAATTCCTGGGCCAGTCCGTGGACAACCTCCATGGCTACTTTGAGCACGCTTTTCAAGCCATCTCCCCAATTGGTACCCATGTGCTGGAAGCCTCTGCACCACAACGTGAGAAGCTGACCAAGGACATCGAGGACCTCCGCAAGCAGATCGCGCCCATGCGTGAGGAGCTCAGGCATGTTCTGCAGAAGCACTTCGAGGAGTACAGAGACGAGCTGAAGCCTTTCCTCGACGAGTACTTGGTCAAGCAGCGTGAGCACATGGAGGAAGTCAAAACCAAGCTGGAGCCGGTGATCAAGAGCTTGAAGGAGAAGATTGGAACCAACTGGGAGGAGACCAAGTCCAAGCTGACGCCCATCCTGGAAGCTGTGCGCGAAAAGTTGACTGCGTATGCGCAGGAAGTGAAGACCCAGCTGGATCCCTACATCCAGGAATATAAGGATCAGGTGGAAAAGGGAGCCTTGGAGTTCCGCGAGAGCGTGCGATCTGGAGAACTGAGGAAAAAGATGACCGAATTGGGCGAGCAGGTGAAGCCTCACTTTGAGGCAATATTTGCAGCTGTCCAAAAGTCTCTTAGCAAGGAGTAAACTAGCCATTTTTTACACCATCCACCCTGCCTTCTTCCTTGCCTCCTGCGCCAAGCACCGACACCCCGACCCGTCATCCGGAAGGCTTTTCTCAGCATAACCAACCTTTACTCGAAGCACACAATACACGAATACACTCATATGCACTATTTACACATTTCCCACCGCTACAGGACTCACATCCTCTCTAATGGGCAAACACAGATATGAATAAA

Function

NR:

description
apolipoprotein A-I

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000092_03860647_03862519.mRNA True 1614 mRNA 0.46 3 3860432 3863147

Neighbor

gene id symbol gene type direction distance location
CI01000092_03855138_03858761 TBX10 coding downstream 1671 3855138 ~ 3858761 (-)
CI01000092_03841542_03853786 BACE1 coding downstream 6440 3840337 ~ 3853992 (-)
CI01000092_03762168_03785262 NA coding downstream 75025 3760820 ~ 3785407 (-)
CI01000092_03750015_03753913 CYP2Y3 coding downstream 106456 3749240 ~ 3753976 (-)
CI01000092_03733899_03743505 NA coding downstream 116875 3732957 ~ 3743557 (-)
CI01000092_03883093_03883504 NA coding upstream 19820 3882967 ~ 3883707 (-)
CI01000092_03890410_03901625 NA coding upstream 27263 3890410 ~ 3901625 (-)
CI01000092_03940545_03951203 NA coding upstream 77181 3940328 ~ 3951322 (-)
CI01000092_03957253_03983692 LIMK1, LIMK1A coding upstream 93574 3956721 ~ 3983692 (-)
CI01000092_04029480_04033662 NA coding upstream 166256 4029403 ~ 4033662 (-)
G306089 NA non-coding downstream 117184 3742480 ~ 3743248 (-)
G306083 NA non-coding downstream 134755 3725027 ~ 3725677 (-)
CI01000092_03682820_03688497 NA non-coding downstream 177817 3682263 ~ 3688531 (-)
G306010 NA non-coding downstream 182664 3676767 ~ 3677768 (-)
G306017 NA non-coding downstream 185998 3671445 ~ 3674434 (-)
G306120 NA non-coding upstream 151638 4014785 ~ 4015061 (-)
G306121 NA non-coding upstream 162617 4025764 ~ 4026076 (-)
G306123 NA non-coding upstream 164227 4027374 ~ 4027599 (-)
G306139 NA non-coding upstream 242818 4105965 ~ 4106251 (-)
G306142 NA non-coding upstream 248857 4112004 ~ 4116902 (-)
G306014 NA other downstream 180944 3677874 ~ 3679488 (-)
G305772 NA other downstream 1135488 2724594 ~ 2724944 (-)
G304459 NA other downstream 2628140 1231900 ~ 1232292 (-)
CI01000092_01086701_01097333 CLRN1 other downstream 2763514 1086404 ~ 1097333 (-)
G304369 NA other downstream 2801512 1058325 ~ 1058920 (-)
G306679 NA other upstream 633267 4496414 ~ 4505953 (-)
G306792 NA other upstream 941248 4804395 ~ 4865973 (-)
G306902 NA other upstream 1290521 5153668 ~ 5154133 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008865 apoa1b coding NC_007126.7 CM002899.2 102925 ~ 108414 (-)