XLOC_010945 (si:dkey-199f5.8)


Basic Information

Item Value
gene id XLOC_010945
gene name si:dkey-199f5.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41740365 ~ 41787421 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021403
GAAGTGTCCTCCTGCGCGTGCACACTCTGCGTGAGCGCGCATCACTTCCTGTGCATGCAGCGCTTTCAACTCCGACAGGACAAGCGAGAGTCGACGAACTCGTACGAAAACACAGGAGTAACGGAATATCTGACCGAATACTCCACCAAACTGTCCCGGGCTGGTCAGACACTTGACTCCTGTCATTGGACCAGCTGGCATTGGACGAGGTGTCGGACCCTCCCCCTGCATGGCAGCAAAATGACACAATAGCTGGGGGTGTTCAATATCATCCCTCCCCCCCTCTCTTTGTTTCCCCCTCCTACATATTCAAGATACTCAGATACATATTGACTATCTTACACCAACACGTTATAAAACAATACCCTGGGATACCTCTGTGGCCCCACACTTTGTAGGGGCCATGAGACTTTTCCAGGACTGCTGCTGCTAAGGACTATCTGGGAACAAAACAATCCGTTTCCTTCCAGCGACTGGACACATCCTCCCAGTTCCAACGTCTAGAGCTAGACGGAAGCTCGGTTGATCATTAAGTCATGAAAACACCAGAGGACCATTGGGAGTTTCCATTCAGAGTTGAATATTAACAGGCTGAAAGACTGCAAAGTTAAATCAAACTGCAGCACATATCTGAAAATATCTTTTAGAAAAACGATACCTCTCCTTAGCAGATTCATCCACATCTGAAGTGCCTTGTGCTTCATCAAACTTGTTTACATCTATTCCACATATCTAATCCGTTCGCCAATCCTTGAAAATAGACCTATTGTTTACATCTCTACGCCTTACAGCTTTTCAAACCATATCTTTTCCATTGGTGTCTTCTGTTTGGGTGCATAAGAGTCGCTGTCTCGTATATCAGAGATACAAGGAATGAGATCACCAATAGAGTTCAGTTCCTCAAATTCATCCAAACTTAAATCACTCTCATTTGACTCTCAGTGGTGCACTACTAGCTTGAGTGTCATCATGTTCACGCTGCAAACCAAATGGCGTTACTTGATCATGTTTTTAGGCGTCCAGTTAGTGGTCATGGCTCTTCTGTCAAGAGAAGGCTATCAGAAAAGAGTGTCGTATTTTTTCCGGATATTCCGAAAGCCGGATTCTTCGGCAGGAAGCATGATTGGGGGACGCAACCATACAGATGTCTACGCCAACCTTTCCCGGTTAGGCCCTCCTATTAATAGAGATGACATGCCCTACTGCCCCAAGCAATCTCCACACCTAGTTGGACCAATTCATGTCACTTTCCCTTCCGGGCTCACACTTGCCGATGTGGAGAGGAAGAACCCACTTGTTGTCCGTGGAGGTCGCTATAGGCCGCCCAACTGTGAGGCTCGCCACCGCACCGCAATAATCATTCCTCACAGAAGCCGGGAGCACCATCTCAAGTTCCTCCTCTACTATCTGCACCCCTTCCTACAGCGCCAGCAGCTCAACTATGGCATCTATATCATTCACCAGGCTGGTAATTACACCTTTAACCGAGCGAAGCTGATGAACGTGGGCTTTCGTGAGGCCATGAGGGATGAGGACTGGGACTGTCTCTTCTTTCATGACGTGGACCTCATTCCAGAGGACGACCGCAACACCTACATCTGCGACGCTCACCCTAAACACGCTGCCATCGCCATGGACAAATTTGGCTACAAGTTGCCTTATAAGATGTATTTTGGTGGAGTGTCGGCTCTGAGTCCTGATCAATACCTCAAGATGAACGGCTTCCCGAATAATTACTGGGGCTGGGGTGGAGAAGATGACGACATTGGCGTCCGGGTTTCGCTTGGAGGAATGGTGATCAGCCGACCATCCATCAACGTGGGTCGATATAAGATGATCAAACACAAGCACGACAAAGGCAATGAAGTGAATCCCAAAAGGTTTAACATGTTGGCCAAGACCCGTCATACGTGGAAAGAAGACGGCATGAATACAGTGGAGTATGAGATCATATCCCGGGATTACCAACCCCTCTACGCCAACATCACAGTCAACATCGGCACAGAGGCAGGCCTGCACCCGACCAAAAATAAACCAGCTTCCTAACCATCTCCCAGAATTCATGCCCATCCCCTAATGCTGACCACTCTCCCACAATGCACATGGCCAGTGAATCCACAGGACGCCTTTACCGCACCACAGACCTTCAGTTTCCTCTGGTGCCATCTAGTGGTCTCACGATTCTTGTTTCTTTCTCTTCCTCCAAAGTTTCATCCTGTGCTCACTGGTTCACTTTATTAGTCAGGACGCTGCAGAAACTGGGGATCGCTCTGCAGGGAGAGGATGCGTTTTCCTGACGGACAAACTCCTCGTGCGTCCTCCGTGCCCCATCGGCACCATTTATAAACCTCCGTTGCCTTAGAATCAAGCTGCACTCGCTCCTTACATTTCTTTCATGACTATTGAAGCGTCATGGTTGATGTTTCTGGCCGACTTTTAGGAGAGAACCATGTTAGTTTTTCTGCCACACGAATGAAATAGTGAAGCAGGCCGATGTGCTGCATACGCAAACATTGTTTGCTGCACTACTCTGTGAGTCAGTTGCATTTTCTGTGCGGTAAATTAGTGCTTTTGATTACGTACTGTATTGTTTTCCTGATGGGTGAAGTAATGGATATATATTCCATTTTTGAGCAAATCCGTCAGAATTGGCCTCTTTGGTAGTAATAACCACTCTACTTGTACTGAGTTtctcatcactttttttttttttcattcccgAATTGCCTTTTGGTTGGCTGAGTAATAATATTAGCTTTTATAATCAACACGTTGCCTCTCGTTTTCATGATTTATTCGACACGTTATATTTTGTctgcatgagttttgttttattgcttgcGATTGGCTGGTTGTGTGCGGTTCTGTCGTTTGCTTTGGATTAGGAGTGGAGTTGTTGAATGTAGCCCTTTTCTTTCTTTACGGTGAGGAAATGTCATATCAGCACAGAGAGCATCGTGTTGTGGTCGTTGAGTTCAGTCTTCAGGTTTTTTTGTCTCATTCTCATTTgagtccagcatttttttactaaaaattaaGAGCCACTTGCACTCATTATTTGAAGTTTATATCTCAGTAAAGTTGAATTCAGTATAAAAATTCGATTAAATAGTTACTATAAAATTATTGTTAATGTTAAAAAAGTacttttttgccatttttacaTGAATAGTTATGTAGAATCAAATGCAGTAACATTTGTAAAACCGGCATTTTACCATTAAACcataaattactgaaattattatatacatttataaaccaTATTCACACACAGTTTTGCAGTGAATCAAAGTGAACgttcacaaaaaattaaatatattaaaattgtgCTGTTAAATTTGATTTGTCGCATTCAAATGCATTGCTATAAAACCCATTTTATGTGAAGTGGTGAAACAAATAGTGCGCTAACATTTGGAATATTGTTAAATGCGGCAGTATTGTACATTATCTGTGCAAGCATGCATAATTTAGTATGATTGATACAAAATGCTGCTTTGAGATATGAATTGCTGCTTGAACTGCTTGAATATTTGTAAATTTGTTCTTGCATAAATTGGTTGAATGAATCGAAAGAACTCGCGTAAAATACTCCGCCTCATTTCAGTTAACGCATTAAACGTTATTTTCATAAAGCTTGATGAAAAGTgtagcattaaagggatagttcaccaaaaaattaaaactgtcattatttactaatTCTTGacctccaaacctgtttgacattctttgtcaaatattcaacaaatactatgggagttaatagttactggtttccaacattcttcaaaatatcttctttagggCTCAGCAGAACAAAATACGAACTGGTTTGTAATAATTCAAGTATGAGACATAATTAAGTTggatgaactgtccttttaaatgcaccaatatcCTTCAACTTTTTACAATACCTCTCATCTGAAATCATTGCTTAAACCATGCTTTgcataaatcatttacatttttacaaatgtgcAAACAATTATAAAACCATTTACCACTCTACCACTCTAAGAATTGCACATATTGGGATAAATCAAACCATTTAATGCAACTTGTACATTGGAGTGATTTGAAATAGTTGACATGTTGTAAAGGAATTGAGTATATTCTCAAATGTACTTTTACAATTGAGCAGTTGACCGATATTGATGACAAACGAATACaaatgcattactttaaattaGCTAACAATTTCCTTATATTGAAAATGCATCGTCCCCATCTGAATGTCCCACAGTTTCATAGTGAAACAGACTCTTGATGGTCCGGCTACCAAAAAACACGACTGTTTCAGACGGATCTGTGCATGCGTGAGGTGAATGAAAGCAAACGTGCGTCTCGGATTTGTGTTTGTGAGACTGATAAATCTCAACGtttttcagaagctgctgatttCTGGGTGAATGTGAAAGGTGGAGGTTTTAATCTCTTTAATATGTTTGCCGTGTTTGGAGATTTTAAGTGCttgtttgaatgaaaaaaaaaatggtgttgGGTTATTGAGGCAGAGATACCAAAAATAATCATATCATATTTTTTTAAGCatgctttctttttttcccccgttttgcttaaaagtctttttttttaatgcagagaTGTTGGTGGTCATCTATGGTCAGGCCATTTAAACCTGTCCATATATTACACCAGTCTGTGTTGTCATAGAAAAATCACCAGTGTGTATTTTTTGACTTGATTTTTAGCTGTAATTGGTGACTGGAAATGTTTATGCTTCACCTTTGAGAATTTATATTTGATAATTATCCCGATCGCCATCATAGAAGGTACTACTTTTTTGCGCTGTTCAGCCACGAATGCTATAGTTTGATATGTAGAGATGATGGGCTGCACACTACTCAGGTGGGATGATGATCAGACGTTTCTAAATGTGCCTTATTGGGCGTCCGTAATCTCAAGTTCTTCGGTGGGCAGTGCTCTCGGTGCGGGGCATTCGATTTTCTTTCTGAAGTCTGCACACTACTCAGCGGCCTTATgatgatttaataaaaacaaacgtTAATGT
>TCONS_00021404
ACACTTGACTCCTGTCATTGGACCAGCTGGCATTGGACGAGGTGTCGGACCCTCCCCCTGCATGGCAGCAAAATGACACAATAGCTGGGGGTGTTCAATATCATCCCTCCCCCCCTCTCTTTGTTTCCCCCTCCTACATATTCAAGATACTCAGATACATATTGACTATCTTACACCAACACGTTATAAAACAATACCCTGGGATACCTCTGTGGCCCCACACTTTGTAGGGGCCATGAGACTTTTCCAGGACTGCTGCTGCTAAGGACTATCTGGGAACAAAACAATCCGTTTCCTTCCAGCGACTGGACACATCCTCCCAGTTCCAACGTCTAGAGCTAGACGGAAGCTCGGTTGATCATTAAGTCATGAAAACACCAGAGGACCATTGGGAGTTTCCATTCAGAGTTGAATATTAACAGGCTGAAAGACTGCAAAGTTAAATCAAACTGCAGCACATATCTGAAAATATCTTTTAGAAAAACGATACCTCTCCTTAGCAGATTCATCCACATCTGAAGTGCCTTGTGCTTCATCAAACTTGTTTACATCTATTCCACATATCTAATCCGTTCGCCAATCCTTGAAAATAGACCTATTGTTTACATCTCTACGCCTTACAGCTTTTCAAACCATATCTTTTCCATTGGTGTCTTCTGTTTGGGTGCATAAGAGTCGCTGTCTCGTATATCAGAGATACAAGGAATGAGATCACCAATAGAGTTCAGTTCCTCAAATTCATCCAAACTTAAATCACTCTCATTTGACTCTCAGTGGTGCACTACTAGCTTGAGTGTCATCATGTTCACGCTGCAAACCAAATGGCGTTACTTGATCATGTTTTTAGGCGTCCAGTTAGTGGTCATGGCTCTTCTGTCAAGAGAAGGCTATCAGAAAAGAGTGTCGTATTTTTTCCGGATATTCCGAAAGCCGGATTCTTCGGCAGGAAGCATGATTGGGGGACGCAACCATACAGATGTCTACGCCAACCTTTCCCGGTTAGGCCCTCCTATTAATAGAGATGACATGCCCTACTGCCCCAAGCAATCTCCACACCTAGTTGGACCAATTCATGTCACTTTCCCTTCCGGGCTCACACTTGCCGATGTGGAGAGGAAGAACCCACTTGTTGTCCGTGGAGGTCGCTATAGGCCGCCCAACTGTGAGGCTCGCCACCGCACCGCAATAATCATTCCTCACAGAAGCCGGGAGCACCATCTCAAGTTCCTCCTCTACTATCTGCACCCCTTCCTACAGCGCCAGCAGCTCAACTATGGCATCTATATCATTCACCAGGCTGGTAATTACACCTTTAACCGAGCGAAGCTGATGAACGTGGGCTTTCGTGAGGCCATGAGGGATGAGGACTGGGACTGTCTCTTCTTTCATGACGTGGACCTCATTCCAGAGGACGACCGCAACACCTACATCTGCGACGCTCACCCTAAACACGCTGCCATCGCCATGGACAAATTTGGCTACAAGTTGCCTTATAAGATGTATTTTGGTGGAGTGTCGGCTCTGAGTCCTGATCAATACCTCAAGATGAACGGCTTCCCGAATAATTACTGGGGCTGGGGTGGAGAAGATGACGACATTGGCGTCCGGGTTTCGCTTGGAGGAATGGTGATCAGCCGACCATCCATCAACGTGGGTCGATATAAGATGATCAAACACAAGCACGACAAAGGCAATGAAGTGAATCCCAAAAGGTTTAACATGTTGGCCAAGACCCGTCATACGTGGAAAGAAGACGGCATGAATACAGTGGAGTATGAGATCATATCCCGGGATTACCAACCCCTCTACGCCAACATCACAGTCAACATCGGCACAGAGGCAGGCCTGCACCCGACCAAAAATAAACCAGCTTCCTAA

Function

symbol description
si:dkey-199f5.8 Predicted to enable galactosyltransferase activity. Predicted to be involved in glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus.

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4733 Predicted to enable galactosyltransferase activity. Predicted to be involved in glycosylation. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus.

Ensembl:

ensembl_id ENSDARG00000018853

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021403 False 5041 mRNA 0.41 7 41740365 41787421
TCONS_00021404 True 1878 mRNA 0.47 6 41743360 41762983

Neighbor

gene id symbol gene type direction distance location
XLOC_010944 NA coding downstream 2367 41684868 ~ 41737998 (-)
XLOC_010943 atp2c1 coding downstream 73264 41585645 ~ 41667101 (-)
XLOC_010942 BX005012.3 coding downstream 197502 41542079 ~ 41542863 (-)
XLOC_010941 rpp25l coding downstream 204652 41532616 ~ 41535713 (-)
XLOC_010940 NA coding downstream 211352 41523038 ~ 41529013 (-)
XLOC_010946 psmc4 coding upstream 7294 41794715 ~ 41805240 (-)
XLOC_010947 si:dkey-199f5.7 coding upstream 19319 41806740 ~ 41807397 (-)
XLOC_010948 si:dkey-199f5.4 coding upstream 52590 41840011 ~ 41840668 (-)
XLOC_010949 si:dkey-199f5.3 coding upstream 66294 41853715 ~ 41855008 (-)
XLOC_010950 zgc:194418 coding upstream 79755 41867176 ~ 41867833 (-)
XLOC_010626 CR392024.2 misc downstream 20845190 20895112 ~ 20895175 (-)
XLOC_010934 NA non-coding downstream 631653 41103491 ~ 41108712 (-)
XLOC_010933 NA non-coding downstream 690471 41042994 ~ 41049894 (-)
XLOC_010951 CR318611.1 non-coding upstream 95024 41882445 ~ 41882560 (-)
XLOC_010953 BX649388.3 non-coding upstream 160654 41948075 ~ 41949116 (-)
XLOC_010954 BX649388.1 non-coding upstream 168434 41955855 ~ 41965309 (-)
XLOC_010970 CR854827.1 non-coding upstream 1086319 42873740 ~ 42874709 (-)
XLOC_010975 NA non-coding upstream 1185664 42973085 ~ 42974540 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00017806 LOC108277608 coding CM030131.1 CM030131.1 23821734 ~ 23840163 (-)