XLOC_010943 (atp2c1)


Basic Information

Item Value
gene id XLOC_010943
gene name atp2c1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41585645 ~ 41667101 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021394
ACTTATAATTGATTTCTAAGAAGTCCTTAGAAGTTGTTCTTAGTAAAGACACCTTCTCTCTAGGAAACTATTTGATTTGGATCAGCTTGCGAAGTTTGTTGACAGTTCCGGTCTCTCCCAATCGCTCCGCCCCTATTTGCGTGACTAGCGCGATGACGCCATCAGCGGCCGTCAGACAGATGCAACGAAAGCTGACGGAAGATGCAAAAGAAAAAGGACCCGCTGCTTGTCGAGTGTCAACCCGACAGTAAAGATGAGACCATGGTTCCGGTTCTGACCTCGAAGAAAGCCAGTGAACTACCTGTGAACGAGGTTGCCTGTGCACTGCAGGCTGACCTGCAGTTTGGTCTCAACCGGGAGGAGGTTGAACGACGCCGCACATACCACGGGTGGAACGAGTTCGACATCAGTGAAGATGAACCACTCTggaaaaaatatctctctcagTTTAAAGACCCACTCATCCTGTTGCTGCTGTCGTCCGCTGTTATTAGTGTGCTGATGCGACAGTTTGACGATGCCGTCAGTATCACCGTGGCCATTATTATCGTTGTTACAGTTGCCTTTGTACAGGAATACCGCTCAGAAAAATCCCTGGAGGAGCTTGGTAAACTTGTGCCTCCAGAATGCCATTGTATTCGAGAAGGACATCTGGAGCACCTGCTGGCACGAGAGCTTGTACCTGGAGACACCGTCTGTCTGTCAGTCGGAGAGAGGGTCCCAGCTGACCTGCGCCTTTTCGAGTCCACAGATCTGGCAGTTGACGAGTCCAGTTTGACAGGTGAAACGACCCCCTGCACCAAGACCTCTGCCCCTCAACCGGCTGCCACCAATGGCGATATCGCTTCCCGCAGTAACATTGCCTTCATGGGGACGCTGGTGCGCTGTGGGAAAGCCAAGggcaTTGTCATAGGCACTGGAGAAGATTCAGAATTTGGTGAAGTGTTTAAAATGATGCAAGCGGAAGAGGCTCCTAAAACCCCATTACAGAAAAGCATGGATTTGCTGGGAAAACAGCTCTCGCTTTATTCCCTGGGGATAATCGGGGTGATCATGTTTGTCGGGTGGCTTCAGGGAAAGTACATTCTGGACATGTTCACCATAGGTGTCAGCCTGGCTGTGGCTGCAATCCCAGAAGGCCTTCCCATCGTGGTGACGGTGACTTTGGCATTAGGAGTAATGAGGATGGTGAAGAAAAGGGCGATCGTTAAGAAATTACCCATAGTGGAGACGCTAAGCTGCTGTAATGTGATCTGCTCAGATAAAACAGGCACTCTCACTAAAAATGAGATGACAGTCACTCATCTGTTCACCTCTGATGGCCAGCACGCTGAGGTCACTGGCATCGGGTACAATAACTCTGGAGAGATTTTAATGGATGGAGAAGTGGTGCATGGCATCTCCAACACCTCCATCAGCAAGATCGTGGAGGTTGGCTGTGTGTGCAATGATGCCATGATCAGACACAATACTCTGATGGGTCGTCCCACAGAAGGCGCGCTCATCGCACTGGCTATGAAGATGGGTTTGGAGGGACTGCAGCATGAGTTTGTGAGACTGGAGGAGATACCCTTCACTTCAGAGCAGAAGTGGATGGCTGTCCGGGTTGTTCATCGCACTCAGAGGGATAAGCCTGGCTTGTTTTATGTAAAGGGCGCCTATGAGCAGGTCATCCGCTTCTGTACATCCTACAACAGCAAAGGCGTCACTATGCCTCTGAACAATCAGCAGAGAGACTTCTACCAACAGCAGAAGAGCTACATGGGCTCTGGCGGTCTTAGAGTGCTGGCGTTTGCTTCTGGATCTGAGATGGGCTCTCTTACCTTCCTTGGGCTGGTGGGCATCATTGACCCTCCCAGAGCGGGAGTGAAGGAGGCGGTGGCCACGCTGATCAGCAGTGGAGTGGCCGTGAAGATGGTTACAGGCGATTCAGAAGAAACAGCGGTGGCAATTGCCAGTCGACTGGGCCTCTACACCAAAGGTTCACAGTGTTTGTCTGGAGATGAAGTTGACCAGATGGACATCCAGCATCTCTCACAGATAGTGCACAGGGTAGTTGTGTTCTACAGAGCCAGTCCTAGACACAAGTTAAAAATAGTCAAGTCTTTACAGAACATCGGTGCGGTTGTGGCCATGACAGGGGACGGTGTTAATGATGCAGTGGCTCTGAAGGCAGCAGACATCGGCGTGGCAATGGGTCAAACTGGCACTGATGTGTGCAAAGAGGCAGCAGACATGATCCTTGTGGACGACGACTTCCAGACTATCTTGTCTGCCATAGAAGAAGGGAAAGGGATTTACAACAACATTAAGAACTTTGTGCGCTTTCAGTTGAGCACGAGCATCGCTGCCCTCACCCTCATCTCGCTGGCGACGCTTTTGAACTTCCCCACCCCTCTGAATGCCATGCAAATCCTCTGGATCAACATCATCATGGACGGCCCGCCAGCCCAGAGTTTGGGAGTGGAGCCTGTGGACTGGGACGTGATCAGGAAACCCCCGCGTAACGTCCGGGACAGCATCATCACACGCAGTCTGATAGTGAAAATCCTGGTGTCGGCCTTCATCATCGTCTGCGGGACGCTGTTTGTGTTCTGGAGAGAACTGCGGGACAATGAGATCACTCCACGGGACACCACCATGACGTTTACCTGTTTTGTGTTCTTCGATATGTTCAACGCTCTCAGTTCCAGATCACAGACGCGGATGGTGCATGAGATGGGCTTATGCAGTAACAGGATGTTCTGCTATGCTGTTCTGGGCTCCATTATGGGCCAGCTTTTGGTCATCTACTTCCCTCCCCTGCAGAGTGTCTTTCAAACGGAGAGCCTCAGCATTTTAGATCTGCTGTTACTATTTGGCCTCACGTCCTCCGTGTGCGTGGTGTCTGAGATTATAAAGAAAATAGAGAGACTCCGATGTGGCAGCGAAAAAATGTCAGACATGGACAGTGAGTTCCATGATGTATGACACACATTGTGTCCCGATCAGGCTGGGGCACGTGCTGTGGAATATGGCTTGGACAGTTCTCAAACCATATAAACAGTTCGGAGCAACTAGTCTGGTCCCACTTGTACGTAAGGTCCTACTTTAAGGTGGAGACCAGCAGCTGATGGTGGAGCGGTGGCCTGGTCCTGGCTGAAATGTCATCTCCGACATGCTTTAGTGGAGATGTTGTGGTGTGCTGCTTTAAGACTGTACTACTACCCATAGCATCTGGGCCAACTTCTTTATTTATGAGATACTGTATCTGTCCATACAGTGGCTGTCTTGATTTCATGATTGAAgggatttattttttaacattatcattatcctattaaaatgattttgtgtCTTTCACATCTTCTGTTGAAACATTTCTGGTTAGAGGTTTGTGGAACAATATGGATGATGCCTTTTTGCATTCCGGTTTTCCAAATTATGCTTGAATAATCAGCGATATTGCTTTCGGAGGAGGTTGTgtgctcttaaagggatagttcacccaaaactgaaaatgtgcttGC
>TCONS_00021395
gagctgtttttctcttctcttcAGCTTGTCGAGTGTCAACCCGACAGTAAAGATGAGACCATGGTTCCGGTTCTGACCTCGAAGAAAGCCAGTGAACTACCTGTGAACGAGGTTGCCTGTGCACTGCAGGCTGACCTGCAGTTTGGTCTCAACCGGGAGGAGGTTGAACGACGCCGCACATACCACGGGTGGAACGAGTTCGACATCAGTGAAGATGAACCACTCTggaaaaaatatctctctcagTTTAAAGACCCACTCATCCTGTTGCTGCTGTCGTCCGCTGTTATTAGTGTGCTGATGCGACAGTTTGACGATGCCGTCAGTATCACCGTGGCCATTATTATCGTTGTTACAGTTGCCTTTGTACAGGAATACCGCTCAGAAAAATCCCTGGAGGAGCTTGGTAAACTTGTGCCTCCAGAATGCCATTGTATTCGAGAAGGACATCTGGAGCACCTGCTGGCACGAGAGCTTGTACCTGGAGACACCGTCTGTCTGTCAGTCGGAGAGAGGGTCCCAGCTGACCTGCGCCTTTTCGAGTCCACAGATCTGGCAGTTGACGAGTCCAGTTTGACAGGTGAAACGACCCCCTGCACCAAGACCTCTGCCCCTCAACCGGCTGCCACCAATGGCGATATCGCTTCCCGCAGTAACATTGCCTTCATGGGGACGCTGGTGCGCTGTGGGAAAGCCAAGggcaTTGTCATAGGCACTGGAGAAGATTCAGAATTTGGTGAAGTGTTTAAAATGATGCAAGCGGAAGAGGCTCCTAAAACCCCATTACAGAAAAGCATGGATTTGCTGGGAAAACAGCTCTCGCTTTATTCCCTGGGGATAATCGGGGTGATCATGTTTGTCGGGTGGCTTCAGGGAAAGTACATTCTGGACATGTTCACCATAGGTGTCAGCCTGGCTGTGGCTGCAATCCCAGAAGGCCTTCCCATCGTGGTGACGGTGACTTTGGCATTAGGAGTAATGAGGATGGTGAAGAAAAGGGCGATCGTTAAGAAATTACCCATAGTGGAGACGCTAAGCTGCTGTAATGTGATCTGCTCAGATAAAACAGGCACTCTCACTAAAAATGAGATGACAGTCACTCATCTGTTCACCTCTGATGGCCAGCACGCTGAGGTCACTGGCATCGGGTACAATAACTCTGGAGAGATTTTAATGGATGGAGAAGTGGTGCATGGCATCTCCAACACCTCCATCAGCAAGATCGTGGAGGTTGGCTGTGTGTGCAATGATGCCATGATCAGACACAATACTCTGATGGGTCGTCCCACAGAAGGCGCGCTCATCGCACTGGCTATGAAGATGGGTTTGGAGGGACTGCAGCATGAGTTTGTGAGACTGGAGGAGATACCCTTCACTTCAGAGCAGAAGTGGATGGCTGTCCGGGTTGTTCATCGCACTCAGAGGGATAAGCCTGGCTTGTTTTATGTAAAGGGCGCCTATGAGCAGGTCATCCGCTTCTGTACATCCTACAACAGCAAAGGCGTCACTATGCCTCTGAACAATCAGCAGAGAGACTTCTACCAACAGCAGAAGAGCTACATGGGCTCTGGCGGTCTTAGAGTGCTGGCGTTTGCTTCTGGATCTGAGATGGGCTCTCTTACCTTCCTTGGGCTGGTGGGCATCATTGACCCTCCCAGAGCGGGAGTGAAGGAGGCGGTGGCCACGCTGATCAGCAGTGGAGTGGCCGTGAAGATGGTTACAGGCGATTCAGAAGAAACAGCGGTGGCAATTGCCAGTCGACTGGGCCTCTACACCAAAGGTTCACAGTGTTTGTCTGGAGATGAAGTTGACCAGATGGACATCCAGCATCTCTCACAGATAGTGCACAGGGTAGTTGTGTTCTACAGAGCCAGTCCTAGACACAAGTTAAAAATAGTCAAGTCTTTACAGAACATCGGTGCGGTTGTGGCCATGACAGGGGACGGTGTTAATGATGCAGTGGCTCTGAAGGCAGCAGACATCGGCGTGGCAATGGGTCAAACTGGCACTGATGTGTGCAAAGAGGCAGCAGACATGATCCTTGTGGACGACGACTTCCAGACTATCTTGTCTGCCATAGAAGAAGGGAAAGGGATTTACAACAACATTAAGAACTTTGTGCGCTTTCAGTTGAGCACGAGCATCGCTGCCCTCACCCTCATCTCGCTGGCGACGCTTTTGAACTTCCCCACCCCTCTGAATGCCATGCAAATCCTCTGGATCAACATCATCATGGACGGCCCGCCAGCCCAGAGTTTGGGAGTGGAGCCTGTGGACTGGGACGTGATCAGGAAACCCCCGCGTAACGTCCGGGACAGCATCATCACACGCAGTCTGATAGTGAAAATCCTGGTGTCGGCCTTCATCATCGTCTGCGGGACGCTGTTTGTGTTCTGGAGAGAACTGCGGGACAATGAGATCACTCCACGGGACACCACCATGACGTTTACCTGTTTTGTGTTCTTCGATATGTTCAACGCTCTCAGTTCCAGATCACAGACGCGGATGGTGCATGAGATGGGCTTATGCAGTAACAGGATGTTCTGCTATGCTGTTCTGGGCTCCATTATGGGCCAGCTTTTGGTCATCTACTTCCCTCCCCTGCAGAGTGTCTTTCAAACGGAGAGCCTCAGCATTTTAGATCTGCTGTTACTATTTGGCCTCACGTCCTCCGTGTGCGTGGTGTCTGAGATTATAAAGAAAATAGAGAGACTCCGATGTGGCAGCGAAAAAATGTCAGACATGGACAGTGAGTTCCATGATGTATGA

Function

symbol description
atp2c1 Predicted to enable ABC-type manganese transporter activity and P-type calcium transporter activity. Acts upstream of or within manganese ion homeostasis and manganese ion transport. Predicted to be located in membrane. Predicted to be active in Golgi membrane; endoplasmic reticulum; and plasma membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Hailey-Hailey disease. Orthologous to human ATP2C1 (ATPase secretory pathway Ca2+ transporting 1).

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0055071 manganese ion homeostasis biological_process
GO:0006811 ion transport biological_process
GO:0006816 calcium ion transport biological_process
GO:0006828 manganese ion transport biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008553 proton-exporting ATPase activity, phosphorylative mechanism molecular_function
GO:0016887 ATPase activity molecular_function
GO:0015410 manganese transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-615 Predicted to enable ABC-type manganese transporter activity and P-type calcium transporter activity. Acts upstream of or within manganese ion homeostasis and manganese ion transport. Predicted to be located in membrane. Predicted to be active in Golgi membrane; endoplasmic reticulum; and plasma membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Hailey-Hailey disease. Orthologous to human ATP2C1 (ATPase secretory pathway Ca2+ transporting 1).

Ensembl:

ensembl_id ENSDARG00000060197

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021394 False 3509 mRNA 0.50 27 41585645 41667101
TCONS_00021395 True 2769 mRNA 0.51 26 41586184 41646164

Neighbor

gene id symbol gene type direction distance location
XLOC_010942 BX005012.3 coding downstream 42782 41542079 ~ 41542863 (-)
XLOC_010941 rpp25l coding downstream 49932 41532616 ~ 41535713 (-)
XLOC_010940 NA coding downstream 56632 41523038 ~ 41529013 (-)
XLOC_010939 siglec15l coding downstream 69928 41505255 ~ 41515717 (-)
XLOC_010938 cmtm7 coding downstream 81720 41495670 ~ 41503925 (-)
XLOC_010944 NA coding upstream 17767 41684868 ~ 41737998 (-)
XLOC_010945 si:dkey-199f5.8 coding upstream 73264 41740365 ~ 41787421 (-)
XLOC_010946 psmc4 coding upstream 127614 41794715 ~ 41805240 (-)
XLOC_010947 si:dkey-199f5.7 coding upstream 139639 41806740 ~ 41807397 (-)
XLOC_010948 si:dkey-199f5.4 coding upstream 172910 41840011 ~ 41840668 (-)
XLOC_010626 CR392024.2 misc downstream 20690470 20895112 ~ 20895175 (-)
XLOC_010934 NA non-coding downstream 476933 41103491 ~ 41108712 (-)
XLOC_010933 NA non-coding downstream 535751 41042994 ~ 41049894 (-)
XLOC_010930 NA non-coding downstream 628012 40949868 ~ 40957633 (-)
XLOC_010951 CR318611.1 non-coding upstream 215344 41882445 ~ 41882560 (-)
XLOC_010953 BX649388.3 non-coding upstream 280974 41948075 ~ 41949116 (-)
XLOC_010954 BX649388.1 non-coding upstream 288754 41955855 ~ 41965309 (-)
XLOC_010970 CR854827.1 non-coding upstream 1206639 42873740 ~ 42874709 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_03941809_03967258 ATP2C1 coding CI01000027 null 3941809 ~ 3967258 (+)