XLOC_010938 (cmtm7)


Basic Information

Item Value
gene id XLOC_010938
gene name cmtm7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 41495670 ~ 41503925 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021387
ATAAATATGGTCACACCCTACTGTAGTTTACATTCTTCTGGTCCTTCATGGTTCCATGTGAGCAGCTTTAATTAAAGAGTAGCTTATTATATGTGTTAAATTCCACATAATATATTCGATAAATATACGAGAATGTCTCACACTGTCGTTACTACTACAACTACCACAACAACTTCCTCGTCGGATGGAGGATTTTGCAACATCGCTTATGTGCGTTCATTTCAGGGATTACTGAAAATCGGCCAAGTGGTGACTCTCCTGATAGCTTTCCTCTGTGTGCACTGTGAGCAGCGCTGGACCGATTACTCCGCCTTTCGCTATTTTGAAGTGGTCACTGCGTGGTTTCTcatcgtcttcttcttcttcttcctcatgCATTTGTTTCGCCTTCAGAGCAAAATCACATGCATCAACTGGACATTGACTGAGTTTTTACATTACGCCGTCGGAGGAATCCTGGTCTTTATCGCCTCTATAGTTGTAGCTGTAAAGAGTTATGGGATCTCAGGGTTAATCGCTGGATCAGTGTTTGGCTTCATGGCAACTTTTCTTATTGCAATCAGCATATGGACTTCATATAAGGTCACCTGTGGCTCTCAACCGACTGGTGCCGCAGTGTAACCGGAAGAAGAAAACATCTTCATCTTGGCTGGAAGTATAAAGAAAAATTCTCAGTTTGTTCTGGATAGATCATAATGATGAGTGCTTTAAATACCCGAAAGGGACATTTTTGATGTTGCTGCATCCTTCATCAAAACTTGGGTGCCTTAATCGTCTTAATCGGTCACACTCTGAATTTTTCAGCTGCAAGACTTCAGTGTTCTTTTAAGAGTGAAGTTTTGGTTTACTATATGCCATGTCTGAAATGAAAAGGGGCCATTTATGCACAAgaatgtttacattatttatttgaaGTTATAATGTGAGATACaattttgattcatttatttagttaacGAAAAGTTTAGATGAAGTGAGGTGTTCATGAAGGATTCATTCAGAttcacagtattattattattatacaaaagtTGAAGtgtatttttgcttttttcaCAGTACCTCTACATATAATTTTATGATATACAGCTTTAAAGTTTGAAGAATGTATTCTTGGCTTTCTAAATGCAAGTCCCTTTGTTTTATACACTGTGTGATATAAAAAGTCGACTTATATAGTC

Function

symbol description
cmtm7 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CMTM7 (CKLF like MARVEL transmembrane domain containing 7).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041111-174 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CMTM7 (CKLF like MARVEL transmembrane domain containing 7).

Ensembl:

ensembl_id ENSDARG00000010032

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021387 True 1181 mRNA 0.38 5 41495670 41503925

Neighbor

gene id symbol gene type direction distance location
XLOC_010937 cmtm6 coding downstream 7647 41467188 ~ 41488023 (-)
XLOC_010936 cpne4a coding downstream 30045 41345477 ~ 41465625 (-)
XLOC_010935 ptpn23a coding downstream 364092 41112346 ~ 41131578 (-)
XLOC_010934 NA coding downstream 386958 41103491 ~ 41108712 (-)
XLOC_010932 si:dkey-201i6.8 coding downstream 435751 41032961 ~ 41059919 (-)
XLOC_010939 siglec15l coding upstream 1330 41505255 ~ 41515717 (-)
XLOC_010940 NA coding upstream 19113 41523038 ~ 41529013 (-)
XLOC_010941 rpp25l coding upstream 28691 41532616 ~ 41535713 (-)
XLOC_010942 BX005012.3 coding upstream 38154 41542079 ~ 41542863 (-)
XLOC_010943 atp2c1 coding upstream 81720 41585645 ~ 41667101 (-)
XLOC_010626 CR392024.2 misc downstream 20600495 20895112 ~ 20895175 (-)
XLOC_010933 NA non-coding downstream 445776 41042994 ~ 41049894 (-)
XLOC_010930 NA non-coding downstream 538037 40949868 ~ 40957633 (-)
XLOC_010929 BX324007.1 non-coding downstream 812967 40681928 ~ 40682703 (-)
XLOC_010927 BX324007.2 non-coding downstream 911620 40521738 ~ 40584050 (-)
XLOC_010944 NA non-coding upstream 180943 41684868 ~ 41737998 (-)
XLOC_010951 CR318611.1 non-coding upstream 378520 41882445 ~ 41882560 (-)
XLOC_010953 BX649388.3 non-coding upstream 444150 41948075 ~ 41949116 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_04015806_04037491 NA coding CI01000027 null 4015730 ~ 4038774 (+)