CI01000027_04015806_04037491


Basic Information

Item Value
gene id CI01000027_04015806_04037491
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4015730 ~ 4038774 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_04015806_04037491.mRNA
CCATATAAGCAGCTTTAAATAAATATTATCTTAGACTATTTGTAAAGTTCCTCATATATTAGATAGATATACCAGAATGCCTCCCACTGCCGTTACTACAACCACAACAACAACAAGAACATCCACCGGGGATGGAGGATGTTGCAGCATTGCTTATGTGCGTTCATTTCAAGGATTACTGAAAATCGGCCAAGTGATGGTCCTCCTGATTGCTTTCCTTTGTGTGCACTTTGAATGGCGTTACTATCACTCTTCCTTACGCTACTTTGAGGTGGTCACTGCATGGTTTCTCATCGTCTTCTCCATCTTCTTCTTCGTGCACTTTTTTCAACTTCAGAGCAAAATCACATGCATCAACTGGGCATTAACGGCAAGAGTTTTTACATTATGTTGTTGGAGGAATCTTGATCTTAATTGCCTCTATAGTTGTATCTGTGCTGAGTCATGGGGTCTCATCACCTTTAGTCGCTGGATCTGTGAGTGCCCTTTTGTGCTTGCAATATATACAGTGTTTGGCTATATGGCTACTTTTCTTATTGCAATCAGCATATGGACTTCTTATAAGGTCACATGTGGCTCTCAACCAACTGACATTCAGCAGAACTACTTTAACAGAGTGACTCATATCATGCTCACTACTCATGGTTATAGTACGTGGGTGTTGCCAAGCAAGAGCTACTGGAAAGCCATTACGCCGTCAGGGAAATACCTCAAAAAGAAGAAGGAGGAAATATGCTGTAGTTTGCTGGAATGTGGAAGGAAAACGATCAATTCCCTAGAGAAGAAATTTAACTACAGTATATACAGTATGGCCACTGCAGACACGGTGTACAACACCACCACAACAACAGCGCAGGAGCCCAAATCCAGAAAATGGATAATTGTGCCATCAGAGAATCTGGAGAAAATTCGATTTGTGATAAAAGTCATTGAAGTGGAAAAGAAAGGTGTTGGCTGTTCAAGTGGCTATTTAATAGATATTGCTTGTGCTTTGGATAGAGGGAAGTGGAGTGAAAAGTCTCCTGGAATTGATGATAACTGTGAATACTTCACCTTTGGACTGGATGACCATTTAGTGGTGTTACATGTGGCTAAAACAGAGTTCAGCATAATGACATCACAGCTCCTTTCCTTTGTGGCTTTTGTGATGGAGGAGGTAGTGTCCAACTGTTCACACTGTGGACCACTCTACTTCTTTGAATTTGTCAGTTGCACAGCCTTCCTCTTCACACTGTTGCTCCTCATCCTCCTGGCAACAACGCTGCACCAGAGAGTCGGAATTGACAGCTGGCCTAGTCTGGATTTTGGATACACAGTAGTCATGGCATTCCTATTCCTCATTGCCAGCGCTGTGTTTGCAGCAGACAATGGCAAGACGAGCCTGGAGCAGGGCGCTGTGGCATTTGGCTTCCTGGCCACGGTGGCCTTCTTTGCTGACTTTATTTACTTTTTGAAAGTTCGTGGTATTCCTTGCCGAAAGGGAAACAACCAACCAGCAGACCAAACACCCAGACCAGAGGCAGAGAAACTTAATTCTAATGGAACTGACTGAGGCTTGGTAGCGTTTTCACCAGCAAACTGCTGTCATATTCAAAAGCTTTTTTCCCTTTTGACAAACAATTTTTTATACAAGAGAAATGTTTTTTACCCAAAGCAAAAAATTTCTTAATATTTCCATTTCAGTCAATTACTAACTGGCATGTTGGACCAGTTTTCTACTGTGCCTTAACTGTTTTTATTTTCTTTTTTACACAAGTCTTAATTTCACAGTTGAAGTAGAAATCATTCCTGTATAGTGGTTTCTCCATTTGGGGATTGCTTGTATTATATTTCCATTACTATTTTTAAACAGAGAAAAAAAAATCATATTTTCATGTAGTCATACTTTTGCATGAATACACAAATTAAGTTGCTGTCCCTTTTGGAGTGTGTGTTCTGCATCATCTTATTTTATGAATTAACAAGTACAATAAGATGCACTGTATTTATAAAAGAAGTACTAATTCCTGATGTTTTTATAGTTATATATGCATTCCTGAAATAATATATTTTGGAGCAAAATCAGGGTTTGATTAAGTTGAAAATTACCTATTTTACAGACCAGGAATATGGATATAATATTGGATACAAGGCTTAAAAAATCATGAAATATTATTGTGGGACTGGTAAATATTGCACTGTATACACAAATGTCCTTAAGTCAACTTTACTGTAAACATTTTTAAATGAATGTGGTGACAGCAGGATGACGTTTTTATGTACAGTCGTTGTTTTTTTGTTTTTTTTTGTTTTTTTTTATCGAAGCAATCTGTCATTTTTGTATTGTGTGGAACGAGAAATGTTGTATATTTTCCTTTGTGCTTTATCTTGTTCCATGTGAGCCCAGATTGTGTTTTATGTAAGCATGTTAAGCGATGAAGTGCTTTAAATCTAATTCTAAACAGATGTCTTTATTCGGAGGAATGTGCGTGTAGGCCCAAATGTGTTTGTTTAAATGCCCGCGGAGAGGAACGGACTGCAAGTTTTCGTGACACTAATCTGCCTTACGCTTCCACCCTCCTGTGCTGTACAACTGACTGCTGCTTTGTCTTAATTAAGCTTTGTGTATATTTTAAAACCAGATATTTTGTTGATATATTGAAAATAGCCACTTTTAATACTTCTTAAGATATGAATAGATCATCTGGTTAGTTTTAATTATTGCTAAGGGCTTTATGATTTTTAAAATGCAAAAACTAGTGAGTCAGTTTGAATACCAGCATTTTTTTTCTACAAATGGTCACATGGAACATTTTACAGCTGTTTTTGTAAACATCCTTCAATTCCAGTTAAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_04015806_04037491.mRNA True 2835 mRNA 0.38 11 4015730 4038774

Neighbor

gene id symbol gene type direction distance location
CI01000027_04012798_04014351 NA coding upstream 1379 4012747 ~ 4014351 (+)
CI01000027_03998691_04000730 RPP25L coding upstream 14896 3998168 ~ 4000834 (+)
CI01000027_03976548_03994948 NA coding upstream 20702 3975433 ~ 3995028 (+)
CI01000027_03941809_03967258 ATP2C1 coding upstream 48472 3941809 ~ 3967258 (+)
CI01000027_03907257_03920389 CEP85 coding upstream 94742 3907257 ~ 3920988 (+)
CI01000027_04054186_04103227 NA coding downstream 14264 4053038 ~ 4104420 (+)
CI01000027_04213570_04229519 PTPN23, PTPN23A coding downstream 173724 4212498 ~ 4229677 (+)
CI01000027_04350540_04357555 SHE coding downstream 311240 4350014 ~ 4358099 (+)
CI01000027_04381523_04393547 CHRNB2B coding downstream 342749 4381523 ~ 4394114 (+)
CI01000027_04470309_04483532 NA coding downstream 431371 4470145 ~ 4483559 (+)
G139023 NA non-coding upstream 150213 3865013 ~ 3865517 (+)
G139027 NA non-coding upstream 175288 3838205 ~ 3840442 (+)
G139016 NA non-coding upstream 191295 3824046 ~ 3824435 (+)
G138958 NA non-coding upstream 227880 3787355 ~ 3787850 (+)
G139002 NA non-coding upstream 271492 3744009 ~ 3744238 (+)
G140381 NA non-coding downstream 94064 4132838 ~ 4133069 (+)
G140384 NA non-coding downstream 101165 4139939 ~ 4140428 (+)
G140386 NA non-coding downstream 107714 4146488 ~ 4146794 (+)
G140391 NA non-coding downstream 129635 4168409 ~ 4168635 (+)
G140392 NA non-coding downstream 131289 4170063 ~ 4174661 (+)
G138953 NA other upstream 495665 3502072 ~ 3520065 (+)
G138915 NA other upstream 529083 3484387 ~ 3486647 (+)
G138515 NA other upstream 2338870 1664408 ~ 1676860 (+)
G138436 NA other upstream 2507914 1506961 ~ 1507816 (+)
G138290 NA other upstream 3016549 995970 ~ 999181 (+)
G140436 NA other downstream 698624 4737398 ~ 4774262 (+)
G140440 NA other downstream 741643 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 1010149 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 1030578 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 1033288 5071693 ~ 5073136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010938 cmtm7 coding NC_007127.7 CM002900.2 41495670 ~ 41503925 (-)