CI01000027_04350540_04357555 (SHE)


Basic Information

Item Value
gene id CI01000027_04350540_04357555
gene name SHE
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4350014 ~ 4358099 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_04350540_04357555.mRNA
ATATAAAAGGGATTTTAACATTCGGAACCTTTCCCTAAATCAATTTGACAGATTTTTAAAATTAAGTAAATTAAAAAGAGTTCTTGTTTCAAATAACAACAGCAACAACCTTGTGTCAATTGAACTGCACGTTAAAGTGTTGTTAATAAGTCAAAAATCAATTATAGGGGCCATAGTGAGTGATATTTTAGAAGCTGATTAGTTTTCTAAAGGAGTTGCGCGTGTGTATGGAGAGTGGCGCAGACACCTGTGCGTATTCGTCATGGCGAGGTGGTTTAAAGATTTCCCAACTAGTTTGAAGACTGGATCCGACCGGATCCGTTCTGCTTCGGAATCGGGGACTCAGTCCCGTCCCAAACCGGTTCTGACCGTCGGTACTGGTTCCAAGGGGAGTCTGCGTAAAAATTCTGGAGCGGAAAACGGTGGCAGTGGTGGTGGTGGTGGTGGTGTGGGTTCCTTACTCCACGGGAGAAATCGTAAAAATTCGGCCATCGAGCTGGGACGGAACCATTCCAGCACCGGCTCGATGAAAGACGGGAAGATATGGGAAATTCTGATCCCTGGGAAAAGTAAGAAAAACACCAAAATGGAGGGGTTTGAAGACCATCGCACCCTGCGGACCACCAGTCTTGCTGACGCGTATATGAGCAGAATGATCAAGGTTAATGATCCAAAATCCAGTGCAGGAGGATCATCCCCAGACAGCGAGAGGGCCAAGTCACCAATCAGAACAGAAACGATCATCCTGGAGGATTATGCTGACCCATTTGATGCCGAGAAAACAAGGGAACAGAGAGAGGCTGAAAGAGAAGGAGAGAATGATGGCTACATGGAACCTTATGATGCCCAGCTTATTATTACAGAGATTCGGCGACGAGGCTCGAAGGACCTGCTGAAAGTGTGCGTAGTGTTGAATGGAGGAGAGAGTGAAGGATCTGGACCCCCTCAGATCTATGATGTCCCATATGAAGAGGTTCTGGAGGGAATTCCCTTGACCCGACCTGAGTCCGACCCCAGACCACCGGCAGAGTATGAGCTGCCCTGGGAGTGGAAGAAGGAGCAGATTGTTAGAGCACTGTCAGCCCAGTTTGATGGAGTGGAGCGCATGTCGAAGGAAGAATCAGGTTCTCCTACAGTAAAACAGCAGACCCTGAGACATAAGAGCTGGACACCCAAATCTCTTCGGCCGAATCCCCCCTCCCCGACTTCCCCATCATCTCCCAGCACCACCCCAGAGAGCGAGACACCAATAGTTGATCCCACCCTGCCCTTGGAGAAACAGAGGACGAGTCAAGGATGTGTGCACATCATTGTAGCGCAGACTAAAGAATGCGGCTACACACTGGAAAAGAGCAGCTGTGTGTTCCCAAGCATCCCAGAAGTGGTGCACCACTACTGTACCCAGCGCCTACCTTTCACCGGGGCAGAACACATGACGCTACAACACCCCCGGCGCCAAACTGCAACAGTATCAATCTTGCAACCAATGCCAATTTTGTTACTTTCCCTGGTGAGCGACAAATTTTACTCCCTGCAACAGCAACTGTGCATTTAAGAGGCCAGAATTGGCACAGTTGATATTTTTAGGATCCGTAGTATAGATTTAGTTTAGAATTAATAGTTGAATTCTCATATTATTATATCCTCTGAGAAAAACATTTCACCTCACGTTGGCAGTTCCTGGATAGCTGAGGTTAGATCGTTAGCTCGGATCAATACAGCAAATTGAAGCTGGCTCGTTCATCAGATAAATGAGTCATTGCCGTTGATTGGCTAATGTTCTTGTCTGTCAGTGATAAAACTTTCTATTGATTGGTTTGAGTTTGGGAATAGTGGGATGTTGAACGAATTACTGACCGCACAGTCATGCTTGGATTCATGGCGTACCGAATGTGACATCACTCTCTTGGTGATGGGAAGTTATGTTTAAATGTATGTCTTTTTGTTTAAAGGTAACAGGTTCCAGTTTAGTCTTTAAGGATGCTAAATTTGATTTTGAAGTAATTATTGTTTTAATCTAGATGAGAGAAATGAGAGGGAAAAAACACATTCTCTGAAGATTTTGCCTTTGTACAATGTAAGACTGTGCAAAGCCTGAA

Function

symbol description
she Predicted to enable phosphotyrosine residue binding activity. Is expressed in several structures, including blood vessel; hindbrain; lateral line primordium; post-vent region; and vascular cord. Orthologous to human SHE (Src homology 2 domain containing E).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_04350540_04357555.mRNA True 2099 mRNA 0.46 6 4350014 4358099

Neighbor

gene id symbol gene type direction distance location
CI01000027_04213570_04229519 PTPN23, PTPN23A coding upstream 120337 4212498 ~ 4229677 (+)
CI01000027_04054186_04103227 NA coding upstream 245594 4053038 ~ 4104420 (+)
CI01000027_04015806_04037491 NA coding upstream 311240 4015730 ~ 4038774 (+)
CI01000027_04012798_04014351 NA coding upstream 335663 4012747 ~ 4014351 (+)
CI01000027_03998691_04000730 RPP25L coding upstream 349180 3998168 ~ 4000834 (+)
CI01000027_04381523_04393547 CHRNB2B coding downstream 23424 4381523 ~ 4394114 (+)
CI01000027_04470309_04483532 NA coding downstream 112046 4470145 ~ 4483559 (+)
CI01000027_04485614_04488056 NA coding downstream 125792 4483891 ~ 4488056 (+)
CI01000027_04488278_04495470 FLAD1 coding downstream 130179 4488278 ~ 4496077 (+)
CI01000027_04497623_04499224 NA coding downstream 139524 4497623 ~ 4499348 (+)
G140482 NA non-coding upstream 28422 4321390 ~ 4321592 (+)
G140408 NA non-coding upstream 139583 4210199 ~ 4210431 (+)
G140394 NA non-coding upstream 174669 4174904 ~ 4175345 (+)
G140392 NA non-coding upstream 175353 4170063 ~ 4174661 (+)
G140391 NA non-coding upstream 181379 4168409 ~ 4168635 (+)
G140489 NA non-coding downstream 3950 4362049 ~ 4362257 (+)
G140490 NA non-coding downstream 43390 4401489 ~ 4403088 (+)
G140447 NA non-coding downstream 46227 4404326 ~ 4413069 (+)
G140495 NA non-coding downstream 56255 4414354 ~ 4414576 (+)
G140465 NA non-coding downstream 69938 4428037 ~ 4430693 (+)
G138953 NA other upstream 829949 3502072 ~ 3520065 (+)
G138915 NA other upstream 863367 3484387 ~ 3486647 (+)
G138515 NA other upstream 2673154 1664408 ~ 1676860 (+)
G138436 NA other upstream 2842198 1506961 ~ 1507816 (+)
G138290 NA other upstream 3350833 995970 ~ 999181 (+)
G140436 NA other downstream 379299 4737398 ~ 4774262 (+)
G140440 NA other downstream 422318 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 690824 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 711253 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 713963 5071693 ~ 5073136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location