G140447


Basic Information

Item Value
gene id G140447
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4404326 ~ 4413069 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU159648
AACCATGTTTATGTTGTAATACCCATGTCATTATACAGATTTGTGTCCTCTTAAACCATATAAGAACACACACACACACACACACACACACACACAAATGGGCAAATTGAAAGAAAACTAACCATTCAAACATATGTATTGATGTTTGTTGTACCTAAAGCATGATGTTTAGCTTGTATTACATGTCTGAAAATTAAAGGACAGCTTAAATGACAATTTTGTCATTATTTCCATATTTTTATTGAAAAGTTATACAAAAAGTTCTCCAGTAGTGTAACGTTCTATTTTACCTCATCGTTCTTCCAAATGGACAAATCTGAAGAGTAAATCTATAAATCCATTTGTAGCATGGCTTACATTTTTATGCCTTGCTTTGTTTATTATCTAAGCAAGCACCAATCAAGCATAAAAAGCACTTATTTCATTGCGTAAAAACAATTAAAGGTAGGGTAGGCAGTTTCTGAGAGGTTCGCAATAGCAAGCTACCTTTGAAAGCATAAAATCCAACATGAATGCGCACAGCCAGAGCAGAGTCTGCAAAGTGTTAAATTACCTCATGTCTCAAAGCACATTACATTATGATAATAATGAACATAAACAATTTTAAGAGCTCTGACTTGTACCACCTGACTGCTGCAGATTCATTTCAGCGTTGATAGTGTTTCCACAGAAAGGCATAATTTGGAGTTCAAGGACTTGAAGCTCCAAGTGTTTGGGTTTGCCTACCCTACCTTTAAATCCTTTATGAAACCACATGAGTCTTGAAATAAAAACCTGTTACATGGAATTTAGACAAACGGAGAAAAAAAAAAAACTTTTTGGGGAATGGGGGGATTTAGCACTTGTACTTGGCCACAGGTCATAATTTCATAAATGTGAATACATGTAAACAGTATTATAATTTGAATGTAATGTTTTTAAAATGTAAAAGTGTTTCATATCATTTTAGTTTAATTGCAGATTTTATATTGCATTAGTGAGAGATTGGGGTTAGTTGTTACACTGGGAAGTCAAGGGCTAAATCACAGTATATATATCGTAATTTCACACATTTTATTAATGTCTGTTGGCCAAAAGAACAGTTTGATATTTTGTTGGTGTGCGTATACAGACTTTTACAATTTATGAAGTAAAAAGTGTGACAACCAGCCCCATTCTCCTTTATTTACCATGATTACTGTTGTAATACTCCAGCAATACAAATTAGTGTCAGTGTAATCAACTGTCATCAGTGCTTTGGGGCTTCTTCATGTCCACTGGCTGTGGTTTTCTGCTCACTCAGTGAGTTCGCCAGGTAGCCCACCAGCGTCAGGTACTCCTGGAAACTGACTTTCCCGTCCTGGTTGTCATCCAGTCCTTTCATCATATCCTTCACTGCTGAAGCACTGTCAGTGTCCTGAGAGAGAGTGTTGATATTTAAAATTATTTAATTTACAACTAATTAAATCATTTAAAACTATACATTTAATCATTTTGTTATTTATAATAATTTTGTTATTTAAAATTAACGACCAAACAAAAACTTTCGTTTCAAGTGGTAAGTGGATTCTAACTTAAACACCTCTGATTGGCCATTGCGTTCAAGAAATCAACAGATACGGCTACATTGCTCAACACGGCAAAACACATTGTAGATAGAAACCTTTGACACTCTCCACAGCACTGGAGTGTTTACCAAATATGTTTCGCCAATATCAGATGGGGTCCCCTGATTCCCTATAGGGCCTAAGTGGGCGATTACCTCGCTTATTGATTTAGTCCGCCCCTGGACATAGTCTTGACATTTACTCATTATTTGACATGCTCTTTAGTGTGACATGCTATACTCCATCTAAAACTATTATTTAAACTAAAATTTATTTTGCTGATTGTTTTTATACATTAAATTAGGAAATATTTGTACTTTTAATTTTAATTCAGTTGTCACACCACAGGCCCACTCAAAATAAATCAATGAAGGCAAAAAGATGATTATACACTTTTTAAAAATAACATTTTGAACAAAAAATCTTTAAGATGGACATGTTATGTGTCAACTAAAATTGACCAAAAAAACTGAGAGATTTGTTAAAAACATCTGGTCAAATGTAAGAACTGAGCTCCTCACACTCAGGATGTTGCCCAGCTGACCCTGGACTAACTTCTGGAAGCTCTTCGCACCCAGGCTCTCTTTTCCACGTGCTGAAGACAGGTACTGCATAACAACGGTTTTAATGGCACCCTCCATATCTGTAACTGTTTTTGCAACAAAACTTTTCTTCTGCTGATTCTTGCCTCTTCTATGTTAAGCCAGTACAATGCCTATAAAATGCCTCTTCTGTGAATTCCAATCTTCCCAAGTTGCTTTTTTTTCCCATCAAATCACTGGGCGTATACCCAGAACTTTATGGGTGGGGAAAACAGGATATATTACTCAAGAGAGGTGTTGTGCGGACATAACTCCCCTCAAAGCGTAGTCTACAGTCATAACCAAGCTGGAAAATGAGGTTAGAGGTGAGAAGAGGTTTTAGGAAGTTAATAATACAACTTTACAATCATTTTTTTCTTTTAATTTCTACCACATTTTCTGCTTTTTGGTTTATTATAGTGTGTTCTGTTCCAACTGCACTGCCCATGTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159648 True 2621 lncRNA 0.36 3 4404326 4413069

Neighbor

gene id symbol gene type direction distance location
CI01000027_04381523_04393547 CHRNB2B coding upstream 10212 4381523 ~ 4394114 (+)
CI01000027_04350540_04357555 SHE coding upstream 46227 4350014 ~ 4358099 (+)
CI01000027_04213570_04229519 PTPN23, PTPN23A coding upstream 174649 4212498 ~ 4229677 (+)
CI01000027_04054186_04103227 NA coding upstream 299906 4053038 ~ 4104420 (+)
CI01000027_04015806_04037491 NA coding upstream 365552 4015730 ~ 4038774 (+)
CI01000027_04470309_04483532 NA coding downstream 57076 4470145 ~ 4483559 (+)
CI01000027_04485614_04488056 NA coding downstream 70822 4483891 ~ 4488056 (+)
CI01000027_04488278_04495470 FLAD1 coding downstream 75209 4488278 ~ 4496077 (+)
CI01000027_04497623_04499224 NA coding downstream 84554 4497623 ~ 4499348 (+)
CI01000027_04537765_04549872 NA coding downstream 124273 4537342 ~ 4549929 (+)
G140490 NA non-coding upstream 1238 4401489 ~ 4403088 (+)
G140489 NA non-coding upstream 42069 4362049 ~ 4362257 (+)
G140482 NA non-coding upstream 82734 4321390 ~ 4321592 (+)
G140408 NA non-coding upstream 193895 4210199 ~ 4210431 (+)
G140394 NA non-coding upstream 228981 4174904 ~ 4175345 (+)
G140495 NA non-coding downstream 1285 4414354 ~ 4414576 (+)
G140465 NA non-coding downstream 14968 4428037 ~ 4430693 (+)
G140509 NA non-coding downstream 91785 4504854 ~ 4505152 (+)
G140512 NA non-coding downstream 100341 4513410 ~ 4513585 (+)
G140522 NA non-coding downstream 258038 4671107 ~ 4671477 (+)
G138953 NA other upstream 884261 3502072 ~ 3520065 (+)
G138915 NA other upstream 917679 3484387 ~ 3486647 (+)
G138515 NA other upstream 2727466 1664408 ~ 1676860 (+)
G138436 NA other upstream 2896510 1506961 ~ 1507816 (+)
G138290 NA other upstream 3405145 995970 ~ 999181 (+)
G140436 NA other downstream 324329 4737398 ~ 4774262 (+)
G140440 NA other downstream 367348 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 635854 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 656283 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 658993 5071693 ~ 5073136 (+)

Expression


Co-expression Network