CI01000027_04213570_04229519 (PTPN23, PTPN23A)


Basic Information

Item Value
gene id CI01000027_04213570_04229519
gene name PTPN23, PTPN23A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4212498 ~ 4229677 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_04213570_04229519.mRNA
TTATAAAAAGTCTTATCATAACTGGTAAAACCTGAAAGCCAAAGAAAGAAAGCATCTGTATGTTTTACTTTCTTTAGACAATATACAATATCACTCAATATTTCTATTAAATACTATACTGTAAATGAGTACCTGTCACAACATTCCCTTTTCTGCCTTCTCTTATAAAATAATATTTTTATCATAGTAAAAATCTATCTTTCCCAACAAATGTATGTTTAGTGCAAAACATGTTGAAGATAAGTGGACAGGCAGTCGATTCATTCTGTTTCCTCACAAAAGTGGTTTACTCAGTGTAGTGAAGCCTCTTCTCCATTGACATCCATTCAAAAAAATAGGTCTAGGGCTATGTTTAGGCTGCCAGCAAAAATGTATCCAGATTTTATCCATATTGGTTTTTGAAAGTCTGGTCAGCGAAAGAAACACTGATTTTTTTTTTTTTTTCCAAATCTGATTCAAACCATATGGAGGTGGTTTGAAATGCGATTCCAGTCAGATTTTTTACAGATGCGTCTCAGTCTGGACACTCTGGCTGCTCAAATCAGATTTCAAACTGTCTTTTGCGTCACTCAAAAATAATGTCAAAACCGGTGACGAAAATGCAGAAAGTATTCATGCGGAAGCCAAACTATATGTCCAAAACTAGATATTTTGTAAATGTAGGGGTTAATTCAGGGTGATTGGGTCACTTTTTGCCATTGAGATGACTTGGAAAATGTGTACCAAACAACCTAAATTCACCTTAAGTATATTCTGGCTTGATATTTTGACATTTAATTCAAAATTTGACACAGTATTCTATCAAGTATAATTTATCTGTACTTTTTTTTTTTTTAACACTGTAGATACAATACAATATAGCACAGAACCACATTTCCCAGAGTCAGAATTTAGATCTCATGACGTCACTTCCCGAGGCTGCAATCGCTTCCTGTATGGATGTAAATGGGGACATGACACAGTCGTTTAGAGCTGTAAAATTCAAAATAATACTTCCGCAGGTGTCTTTCCAAGTACTTGAACGCTATAATACTATTCTACTTTAGTCTGCTCAGCGAAATCGGCGGCTGCGATGGAAGCCGTGCCGCGAATGCCGATGATTTGGCTGGATCTGAAGGAGGCTGGAGAGTTTCAGTTCAGCCCGTCTGTCAAACAGTTCATACTGAAGAACTATGGGGAAGATCCTGACAATTATAATGAGCAGTTGAAGAAACTGGAGCAACTCAGACAGAGTGCTGTGAATGTCACACGAGACTTTGAGGGCTGCAGTACCTTAAGGAAGTACTTCGGGCAGCTGCATTATCTTCAGAGTCGTGTGCCTCTGGGATTGGGGCAGGAAGCTGCTGTCCCTATCTCCTGGACAGAGATATTTTCTGGAAAGACAGTAACCCATGAAGACATCTGCTATGAGCAGGCCTGCATCCTTTATAATTTGGGAGCACTCCATTCAATGTTGGGAGCCATGGACAACAGGGTGTCTGAAGAGGGAATGAAAGTATCTTGCACGCACTTTCAGTGCTCAGCTGGAGCGTTCACCTACCTGCGAGATCACTTCAGCCACAACTTCAGTGTGGACATGAGTCACCAGATCCTCAATCTCAACATCAATCTCATGCTGGGTCAGGCCCAAGAGTGCCTGTTGGAAAAATCGATGTTGGACAACCGGAAGAGCTTTCTTGTTGCTCGAATAAGTGCCCAGGTGGTGGACTATTACAAAGAGGCGTGCAGAGCTCTGGAGAACTCCGAAACGGTTTCAATGTTGGGAAAGATACAGAAAGACTGGAAGAAATTAGTGCAAATGAAGATTTACTACTTTGCTGCAGTTGCTCATTTACACATGGGGAAACAGGCCGAAGAGCAGCAGAAATATGGAGAGAGGGTTGCTTACCTTCAAAGCTCAATAGACAAACTCAATGAAGCAATTAAGCTGGCCAAGGGTCAGCCAGACAGTGTACAGGAAGCCCTTCGATTTACCATGGATGTCATTGGGGGGAAATTTAATTCTGCCAAAAAAGACAATGACTTCATTTACCATGAATCTGTGCCATCTCTGGAGATGTTGACCTCTGTGAAAGGTGCCCCATTGGTGAAAGCTTTGCCTGTAAACCCAACAGACCCTAGTGTCACTGGCCCAGACATTTTTGCAAAGCTGGTGCCAATGGCTGCCCACGAGGCCTCCTCTCTTTACAGTGAAGAGAAGGCCAAGCTGCTACGGGATGTCATGGCAAAAATAGATGGCAAGAATGAGACATTAGAGCAGTTCATGGACTCTCTCGGTCTGGACCCAGAGTCAGTGGACAATATGGAGATGTATAATACCCTTCCGTCTGTGCTGATGGAAAAATGTGCTGCGTTGAGTGTGAGACCTGACACTGTAAAAAATCTCATCCAATCAATGCAGGTCCTCTCAGGTGTGTTCACTGATGTGGAAGCCTCTTTGCGGGAGATTCGAGATGTGTTGGATGAGGATGAGGCAGAGGAGAGAAGACTAGAAGAGGCTGCTGGGAAGCAGGCTGTACCAGATCGGCCCTCAACCCTGGCCGAGCTGCGGAGGGACTTGGAAAAGTATTTGGAAGCCCATGAGAAAGCCAGCTTCACCAACACAGAACTTCATCGGGCCATGAATCTGCACATCAGCAATCTGAGACTCCTCGGTGGTCCACTAGACACTCTTAGAGAGGCATTGCCGAGACCTCAACTTAGTGAGGATGAGATGGCAGGTCTCCAGACTATGAAGAGAATTCTGAGTAAAGTGCAAGAAATGCGGGACCAACGAAGCTCCCTGGAGAAGCAGCTTAGAGACCTGATTCAGCAGGACGACATCACTACTGCTCTGGTCACAACTGAGCGTGCTGACATGAAGAAGCTGTTTGAGGAGCAGCTTAAGAAGTATGAGCAGGTGAAAGTATACATTGATCAGAACCTGGCAGCTCAAGAAAATATCCTGAAAGCACTGACAGAAGCTAATGTACAGTATGCCACTGTGCGCAAGGGCCTGACAGAAACCGAACACAAATGGAACAGCACTGTACAGATGCTAGTGGCCTCCTATGAGGCCTATGAAGACCTAATGAAGAAATCTCAGGAAGGCAAAGAGTTTTATGAAGATCTGGAAACAAAGTCCTCTCGCTTATTGGAGAGAGCCAAGACTGTCTGTAAGGCGCGAAAGGAGGAGAGACAAGCCATTATGGAAAGAGAGCTCAAACAAAAGGCTCCCCAAAGACCCACTGCCCCAAAGCCTCCCCAGAAGAAAGGCCAAAGTGTGGATCTTGCCAACTCGGATGACCCTGAACTGGCAGAGCTGAATGCTGCTATCCTAGCCCTTGGTGGAGATCTCCCAGAAGAGCTACGCAGCCTGCCTCCTGAACTCGCAATTCCACCATCTGGTCATCCTGCAGCACTTTCCGGGGCCGCTGCTAGCTCCATTCTGCGCTGGTCTGGAGCTAGCTCAGCAATACACTTTGCGCAACCCCGATTTCCCCCAAATTTACCACCTCCTGAAGTTCTTGCTCAAATCTCCCGTTTTCCACCACCTCATAGTTTCAGTCCCAGTCTTCCCCAGTCTCTTCTGACACAGCAACAGTTCCCACAGATGCCCAACCCTCAGGTCCTTCCACCACCACCTGTGTCTGGGTACTGCCCTCCATCTTCACAGAACCAACCTGGCCCACCAGTTACTCCAGTCCGACCTTCCACCACTACAGTGGATAGTGTACAGACACCTATTCCTAGCTACAATCCTGCATCTGCCCAGGCAGTTATGCCTCCTCCTGGCCAACACCAACCGATGCCATCAGTGTATGCAGCTCCACCTCAAATGGCACCCCATGTCCAGTACATGCAACAACCTGGTGTTCCCATGGGCCAACCTCCACAGGCAATGCCAGCCCCTCATCCACAGCCTCAACCTCGGCAGGTATTTGCTCAACAAGGTGGTCAAAGCCAACCACAGCCGTTTTACCCATCTGTACCAACTCAACAGCAAATTCCAAGACCTTTGACTGTGCCGCAGCCTCCACAGCACACTCAGCCTCAATTCCCACAGTACATAGCCCAAATAAGACAACCAGGACCACCAAGCTTTCAGCAACCTCAAATCCAAGGACAGTTTGGAGCTCCAGCTACCCATATGCAGCCCCATCAGGCCAGTGCCGTCTGTGTCAATGCCACACTTAGCACATGTCAATCAACAAATTCCCCCTGCTTCCCAGCCCCAAACACCTCCCGTCATCAATCAGATGCCCCATGCTACTCACCCTCAGATACACCCGTCCTCTCATCACTTAGGCCCTGCACCCCATATGCAGATACCTCCTGCCTCAAAACAGATGCCTCCTCCCCAGCAGCCACAAATGCTTGTGCCATCTACTCACATGTCTCCTCCATCTCACCCACAAATGCCTGCAGTCTCCCAACCACTATCTCACTGCCCCCAGTCCCAGATAATCCCTTCTCATCAATCCAACCAACAGCCAGCATACCCAACAGCCCCTCCGAGGGCTACTGTTCCTGTTCAACCTCAGCACTCCCTCACAATATCTACAAATCTCAGCCAACCATTCCTCCTAGCTCTGCACCTTTGAGTTTTCCAGGAGGTATTCCTATGGTTCCCAACCAGGCTGTGGCCTCTCTGCAACCTCAATCCCAGCCACCCACTTCACAGTCTTTAGCCCCACAACAGCTACCCCCAGGAGGCCCAATATCTTATGCTGTTCCACAAGTTGGAGGAGGAGCATTACCGCAGTCTTCAGTTCAGGCTCCAACTCCCACTGGTCCTATACCTCCACCTGACTCCACTTTGTTTCAGCGACAGAACTCTAGTACTGATGACTTACTTTCCTCAAGCCCTGAGAGCCAGCATGGAGGCACCAAGGACACCGCCAATGTCTTACTACCCACAAAAGCTGACCCTCAGGAGGAACATCACAGAAAAAAAGCAGAGGGTGTGAGACTTATTCAGGGTGACCCTTACCAAGCACCAGAGAGGGTCTCAAAACTCAGTGCACAGCTAGAACGGTTTCGATCAAAAGTCCAGTCCTTAGAGCGTCCAACAGGGAAGGGAGGTCTGTCAGAACTTGATATTCAATGGAAAGAACTGCAGGAGCAACAGGAGAAGGATACTCGCCAGCTTTCTATTGCAATTGCTCGTTGCTACACAATGAAGAACCGCCATCAGGATGTGATGCCTTACGACTGCAATCGTGTTGTCTTGCACTCCGGTAAAGACGATTACATCAATGCCAGTTTCATTGAGGACCTATCTGCATACTGCCCCCGGCTTATTGCAACACAGGCTCCCCTCACTGGAACTGCAGCTGACTTCTGGCTCATGGTTTATGAGCAGAAGGTTTCTGTAATCGTCATGCTAGTGTCTGAGCAAGAACTGGAGAAGCAAAAGGTGTTGCGCTACTTTCCATCAGAGAGAGGCCAACAACTTGCTCAGGGTCCAATCACCCTTACCCTTACCACCCAGAAGAGCACTTCTACTCATATAGAGCGGATGATAGGACTACAGTATCGGGACCAGAGTCTGAGACGCACTGTTGTACACCTCCAGTTTACTTCATGGCCTGAACTCTCTGGTGTTGGCCGTACTGGTGCCTTCTGTCTGCTTTATGCAGCACTGCAAGAAATTGAGGCTGGCAATGGTATTCCTGACCTGATCCAGCTGGTGAGGAAAATGAGGCAGCAGAGGAAGAACATGCTCCAAGAAAAGCTTCACCTCAAATTTTGCTACGAGGCTGTTCTTAAACATACAGAGCAGGTTCTGCAACGCCACGGCATCATAACGTCCTCTTGCACCAGGACCCCCAACAACATTGCATTGAAGTCATACTCACGACAGGAATCTCAAGACATTGTCCTGGGAGGAGACATGCCTATTAGCTCCATACAGGCCACCGTAGCCAAACTAAGCATTCGACCACCCAGTATTGAACATGAACAAGAGCCCAGCCAAGACCAGATTCCCTCTGCTTCAGAAGCGGCAAGCATAGGGGAACCAGATCCTACAGATACGTCAATTCAGCCTTCTCAGGACCCTCTTTATTATGAAGTGATGCCTGATTCCATCAGTCCCCCCCTCTCTTGCACTTCTTCTCCAGGCAAGACGCAGTCACCTTCGCCTTCTAGCAGCCATGGAAATGGGTTCACTGGGTCCACTCCTGCCTCCCCTGTCTCAAATCATCACCTTTCCGCTGAAGCCGCGCCTTGTGCTCCCTCGCCACCCACCTCCTCATCTTTAGACCTGCTGGCTTCTCTCACACCTGAAGCCTTCACGCTAGACAGTGCCCATCGAGGAAAACAGCGATTTAGCAAACAAAGCTTCCTTCAGCCGCAGGAAGTGGGCATCTGCTTTTACACCAAAAATGTAATCATGGAGAATGGAAAAAGTGCATCCAAGCTACTATTGTCATTATCAGAAAACATATTAACAGTTTCATTGAGCGACTATCTGCTCGCCCTTTGTACACATGCTGCTTGCACAGTGGGTTGTATATTATTAGTCACTGCACCTGTCTTTGAGCTACAGTGATCTGCAACTTGTATGTAGGGACAAGATGGTTATGAAAATACTACTTGATATGACTTGATGTACTCGTTATATTTAAAACACTTACATTTCTGAATCACTTCAGAAATCATAGCATTTTTATGAGTTGATTCTAACTTGTCATTCTTTGAACTATGTAA

Function

symbol description
ptpn23a Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Orthologous to human PTPN23 (protein tyrosine phosphatase non-receptor type 23).
ptpn23 Enables protein kinase binding activity and protein tyrosine phosphatase activity. Involved in several processes, including early endosome to late endosome transport; positive regulation of adherens junction organization; and positive regulation of transport. Located in ciliary basal body; early endosome; and nuclear body.

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K18040 PTPN23; tyrosine-protein phosphatase non-receptor type 23

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_04213570_04229519.mRNA True 6693 mRNA 0.47 27 4212498 4229677

Neighbor

gene id symbol gene type direction distance location
CI01000027_04054186_04103227 NA coding upstream 108078 4053038 ~ 4104420 (+)
CI01000027_04015806_04037491 NA coding upstream 173724 4015730 ~ 4038774 (+)
CI01000027_04012798_04014351 NA coding upstream 198147 4012747 ~ 4014351 (+)
CI01000027_03998691_04000730 RPP25L coding upstream 211664 3998168 ~ 4000834 (+)
CI01000027_03976548_03994948 NA coding upstream 217470 3975433 ~ 3995028 (+)
CI01000027_04350540_04357555 SHE coding downstream 120337 4350014 ~ 4358099 (+)
CI01000027_04381523_04393547 CHRNB2B coding downstream 151846 4381523 ~ 4394114 (+)
CI01000027_04470309_04483532 NA coding downstream 240468 4470145 ~ 4483559 (+)
CI01000027_04485614_04488056 NA coding downstream 254214 4483891 ~ 4488056 (+)
CI01000027_04488278_04495470 FLAD1 coding downstream 258601 4488278 ~ 4496077 (+)
G140408 NA non-coding upstream 2067 4210199 ~ 4210431 (+)
G140394 NA non-coding upstream 37153 4174904 ~ 4175345 (+)
G140392 NA non-coding upstream 37837 4170063 ~ 4174661 (+)
G140391 NA non-coding upstream 43863 4168409 ~ 4168635 (+)
G140386 NA non-coding upstream 65704 4146488 ~ 4146794 (+)
G140482 NA non-coding downstream 91713 4321390 ~ 4321592 (+)
G140489 NA non-coding downstream 132372 4362049 ~ 4362257 (+)
G140490 NA non-coding downstream 171812 4401489 ~ 4403088 (+)
G140447 NA non-coding downstream 174649 4404326 ~ 4413069 (+)
G140495 NA non-coding downstream 184677 4414354 ~ 4414576 (+)
G138953 NA other upstream 692433 3502072 ~ 3520065 (+)
G138915 NA other upstream 725851 3484387 ~ 3486647 (+)
G138515 NA other upstream 2535638 1664408 ~ 1676860 (+)
G138436 NA other upstream 2704682 1506961 ~ 1507816 (+)
G138290 NA other upstream 3213317 995970 ~ 999181 (+)
G140436 NA other downstream 507721 4737398 ~ 4774262 (+)
G140440 NA other downstream 550740 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 819246 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 839675 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 842385 5071693 ~ 5073136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010935 ptpn23a coding NC_007127.7 CM002900.2 41112346 ~ 41131578 (-)