G140391


Basic Information

Item Value
gene id G140391
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4168409 ~ 4168635 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU159573
ACATGGTTTAAAGCGCACGGCGCAAGTGCACTTAGGGCGTGTCCGAATCCACTTTTTCTAGTTTAAGAACGGGAAAAATGGTCGGCGCGCCCGGTGCATGGTCTAAAAGGGCTGTCCCTATTCTCTTAATGAGTAATGGGTGTGTTTTGGGCATAACGTGAAATAAACCAATCAGAGTCTCATCTCCCATTCCCTTTAAAAACCAGCTGCGCTCGTGCCATGGTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159573 True 227 lncRNA 0.48 1 4168409 4168635

Neighbor

gene id symbol gene type direction distance location
CI01000027_04054186_04103227 NA coding upstream 63989 4053038 ~ 4104420 (+)
CI01000027_04015806_04037491 NA coding upstream 129635 4015730 ~ 4038774 (+)
CI01000027_04012798_04014351 NA coding upstream 154058 4012747 ~ 4014351 (+)
CI01000027_03998691_04000730 RPP25L coding upstream 167575 3998168 ~ 4000834 (+)
CI01000027_03976548_03994948 NA coding upstream 173381 3975433 ~ 3995028 (+)
CI01000027_04213570_04229519 PTPN23, PTPN23A coding downstream 43863 4212498 ~ 4229677 (+)
CI01000027_04350540_04357555 SHE coding downstream 181379 4350014 ~ 4358099 (+)
CI01000027_04381523_04393547 CHRNB2B coding downstream 212888 4381523 ~ 4394114 (+)
CI01000027_04470309_04483532 NA coding downstream 301510 4470145 ~ 4483559 (+)
CI01000027_04485614_04488056 NA coding downstream 315256 4483891 ~ 4488056 (+)
G140386 NA non-coding upstream 21615 4146488 ~ 4146794 (+)
G140384 NA non-coding upstream 27981 4139939 ~ 4140428 (+)
G140381 NA non-coding upstream 35340 4132838 ~ 4133069 (+)
G139023 NA non-coding upstream 302892 3865013 ~ 3865517 (+)
G139027 NA non-coding upstream 327967 3838205 ~ 3840442 (+)
G140392 NA non-coding downstream 1428 4170063 ~ 4174661 (+)
G140394 NA non-coding downstream 6269 4174904 ~ 4175345 (+)
G140408 NA non-coding downstream 41564 4210199 ~ 4210431 (+)
G140482 NA non-coding downstream 152755 4321390 ~ 4321592 (+)
G140489 NA non-coding downstream 193414 4362049 ~ 4362257 (+)
G138953 NA other upstream 648344 3502072 ~ 3520065 (+)
G138915 NA other upstream 681762 3484387 ~ 3486647 (+)
G138515 NA other upstream 2491549 1664408 ~ 1676860 (+)
G138436 NA other upstream 2660593 1506961 ~ 1507816 (+)
G138290 NA other upstream 3169228 995970 ~ 999181 (+)
G140436 NA other downstream 568763 4737398 ~ 4774262 (+)
G140440 NA other downstream 611782 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 880288 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 900717 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 903427 5071693 ~ 5073136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G224882 NA non-coding NW_019170582.1 APWO02000180.1 1536582 ~ 1539918 (-)