CI01000027_04054186_04103227


Basic Information

Item Value
gene id CI01000027_04054186_04103227
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 4053038 ~ 4104420 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_04054186_04103227.mRNA
CTATATGAAGAGGCTCAGTGAGAGTCATTAACAGAGACAGAAATAGATGGGAAACTGGCTGAGAAAACACTCAAGTGGCAAAAATAGCATCCAGAGGATGAAAGACTGATGACGTAGTTTGCCATCGGTGTTGAAAAGTTTGCAAACAAACACTGAGGGAGAGAACCGCTCACCTCCGTATTATCGCTGCTGACCTATAATGTATGAGGCTGTCACCTGTCAGTGCGATACAGTGGGAGTGATGGATGACTTTGCATTGGCTGAGAATTATCCTTTCAATGAGCTGTTCTCTTTCACAGTGCAGTTCTCATGGTCAGATCTACCTCTTTTGGTCTGCTTAACTAAAGCAACATAACTGAATTTAAAGACTAATGTGTTTTCTATCATTCAAGTTTTTTTGTTTATTTTTGCTAATGCAAACATCACTACTATTGCACATATGGGGATTTTCTTTCTCTATATTAAGACATCCGTTCATCATTCAATATATGTCCATCCATCTTCTCAGATTTCTCTCTCTCAGTTCTCTGCATATGCTGTGTAATTTCAGTTAGCTCAGATGATTTGCTCTGTATTATAACTGATTGGGATGGTGGGGAATTCTGATTAGAAATTTTCCCACACATCAGCTCAATAAATTAGTGTCTAGGCTTCCCATATGTCTCACCATAAACACACACAGGGATAAAATATATTCCCAGTAAAAAATGATGGGGTGTTAAATTACACATTTTTTCTTTAGCAGATATTTTGAAAAATGCAGATATCCACCATGCATAATTTTCATTTATTAAAACCAGATGTTTTTGCATTGCTTGATGCTATTGATACAAACATACAAAAGCATTAAGGATGCCAATTGATTAAATCTTTGATAGGCATTACAAAAAGTGCCTTTATAAGTCAATATACTGTATTGTTTGTTTTATTTTCATATTGAATAACAGGTTTATAGTCCACAGCAGCTCATTTTGCAAACAAGTTGGTCGGATTCTCTGAGGTAGACTTTCTTCTAAGTAGGGTCCATTTACACAGGACATATTTTTGTATTTTAAATTTGTTAAATTAATTGTAATAAATCACATATAATATAGTCTCTCACTTATGCAATTTTTTTTTTCCCTTACAGCACAAGTATCTCCTGAAACATGAGCGACATCTACGAGTCTGCAGCCAATTCTCTGGGCTTGTTCAACAGCCCCTGCCTGACCAAAGTAGAGCTGCGGGTCACCTGCAAAGGTATCTCAGACAGGGATGCCCTCAACAAACCTGATCCCTGCGTGGTCATTAAAATGCAGTCCCATGGCCAGTGGTTGGAGGTGTTCAAAGACAGCAAGCGAGGTCTCAGTTCTGTCACTCTTCCTTTTTGCCTCATTTTAAATGGACAGCTGAATGAAGGAAATGTTTCTTCACACTGGTTGGCCTTATTTAAAGCCGTTCAAAAAAAAGTGAGAGGCAACGTGGACAGGACGGAGGTGATTCGGAGTTGTATAAACCCCACGTTTTCTAAGGTCTTCACCCTGGACTTTTACTTCGAAGAGGTTCAGCGGCTACGTTACGAGCTCTACGACATCAGCAGCAGTCATAATGGCATGAGAGAGGTGGACTGCCTAGGAGCCATTGAGTGCACACTGGGCCAAATCATCTCCCAGAGAAAATTCACCAAAGCCCTGCTTAAACAGGGCAACACAGTTGGGAAATCATCTATTACGATCACCGCTGAGGAGCTGACAGGAAATAACGATTATGTCGAACTCTCATTCAGTGCGAGGAAGCTGGATGATAAGGATTTTTTCAGCAAGTCAGATCCATTTTTAGAGATCTACAGGGTAAATGATGACAACACTCAGCAGCTAGTGCACAGAACAGAGACCGTCATGAATAACCTCAACCCCGTGTGGAACACCTTCAAGACATCCCTTAACTCGCTCTGTAGTGGAGACCATGAAAGAATACTGAAGTGTACAGTGTGGGACTGGGACTCGAATGGAAAGCACGATTTCATAGGGGAGTTTCAAGCTACGTTCAGAGAGATGCGATCAGCGATGGATGGAAGACAGGTCCAGTGGGAATGCATAAACCCCAAATATAAAGTCAAGAAGAAGAATTACAAGAACTCTGGGATTGTCATTCTGAATCAGTGCAAGATAATTAAGATGCATTCCTTTCTGGACTACATCATGGGAGGTTGCCAAATACAGTTTACAGTAGCGATTGATTTCACAGCGTCTAATGGGGATCCGAAGAACAGTTGTTCGCTACACTACATCCACCCCTACCAGCCTAACGAGTATCTGAAAGCTTTAGTCGCAGTGGGGGAGATTTGCCAAGACTATGACAGTGACAAAATGTTCCCGGCGTTTGGCTTTGGTGCTCGAATACCTCCGGACTTCAAGGTGTCACATGACTTTGCAGTAAACTTCAACGAGGACAACCCAGAATGTGCAGGAATAGCAAATGGCTCACAGCCCCACCAGGACACATGCCAGCCAATCTCCCCCGAGCAGAGAGCGCACCTTTACGCCCTGGTATTGTCTGGAAAATCCAGCATGACAGTAATGCGGTTCCAACAAACCTGGACTAGACACACAGAGCGCTTGGATCGGGTGAATGACATTGGTATCCAAGGTGTGGTAGAGGCCTACCAGAATTGCCTTCCTAAGATTCAGTTGTACGGTCCTACAAACATTGCCCCGATCATCCAAAAAGTGGCCAACTTTGCCTCTGAGGAAATGCACACCAAAGAGGCCATGCAATACTTCATCCTGCTCATCCTGACGGACGGTGTGATCACAGATATGGCGGACACCAGAGAGGCAATCGTCCACGCCTCTCACCTGCCCATGTCTGTCATAATCGTGGGAGTTGGAAGTGCAGATTTCACTGACATGGAGATGCTTGACGGTGATGACGGAATCCTTCGTTCACCTAAAGGGGAACCAGTGTTGCGTGACATCGTACAGTTTGTGCCGTTCCGTAACTTCAAACATGCCTCTCCTGCTGCTTTGGCAAAAAGTGTCTTAGCCGAAGTCCCAAACCAGGTGGTGGACTATTACAACAGCAAAGGGATCAAGCCCAAGTGCCCCAGCGATTATGAGTCTTCCAGGACGTTTGGTCACTGAAGCCCTGAGCTATCGCTCGTTACAAAAACTAGCACGTTTCTGTGAATTTTAAACCTAATTCCTGTTCTACTTTGTTTTGTTTGCATGCGTAGCCTGTGAGGCTTGCATAGGTGTTGCAATGCTACCATTTCTATTATGTACATGTGTACATGTACAGACTTAAGGCCCATTCACACCAAGAACGATAACTATAAAGATAACTATAACGATAACTATATGTACGTCCACACCATGAATGATAACAGCCTGTTTATTCTAAGCTCACACGCTGCGGTTTCAAAGTGTGTACAACATGTTTTTTCTGTTCTTGTTGCATTTACACAGCTTTAACCAGCAGATGTCCTCAGCATGCTATGTTTCGAGTGAATAGCTAGTGTAATCGATCTAATCTAACAGTGAATTTAGCTGACGAAGTGGAATAAAACCAACGCCTAGTCTTTTTCACTGCAACTTCAAAGGAAGCAAGACAATGTTGTCGAAACTAGCGCTGGATACCTGAGGTAATTTTATGTTACACTGTTTGCTAGCCTGGCATAATGATCTTATTGTTATTACTTTTCGATTGTTTTCCATATATCCATTTTCCTTAAAGTATCATTGAAAAGACTTGTGTGGTGGCTTTTTCTGGATCTCGACGAATAACTTCTCCGCAATGTCGTCTGCCATTTTAAATGCACGAGCGGCCCTTAAATTAGAATGGATTCTGATTGGCTGTCAGTGTTTTATTGTTCAACAGCTGAAAAAAATCGTTCTGAAAGTGATCCCAACGATATCGTTTCTCTATATCGTTATTGTTATAGATGTGGTGTGGACAGTGCTATTCTTTTATATTTAGAACGATTTTTAGAACTATATCTTTATCGTTATCTTTATAATTATCGTTCTTGGTGTGAACGGGCCTCTACAACTATGAAGAAAGCAAAAACTCAAGAAGTTCTACCGATTTACGCATGATGACTGGGATTAGATGAAGAAATACATGGATTATCTGTTGTTTTCTTTTATATAAAGGTTTATTGAGATTTTGCTAAATTTCGTAATGTTCTTACATTGTAAAGCATTTTGGATCTTAGAGAATGAATAGCTATTTGAATTAGAATATCTGTGGACATTCAGGCTTTCTTTCTCTCTATTTTTTGTTCTTTTTTTGCAGATGCAGGGCCAGATGCATGATTGTATTTTGCATGTTGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_04054186_04103227.mRNA True 4315 mRNA 0.41 17 4053038 4104420

Neighbor

gene id symbol gene type direction distance location
CI01000027_04015806_04037491 NA coding upstream 14264 4015730 ~ 4038774 (+)
CI01000027_04012798_04014351 NA coding upstream 38687 4012747 ~ 4014351 (+)
CI01000027_03998691_04000730 RPP25L coding upstream 52204 3998168 ~ 4000834 (+)
CI01000027_03976548_03994948 NA coding upstream 58010 3975433 ~ 3995028 (+)
CI01000027_03941809_03967258 ATP2C1 coding upstream 85780 3941809 ~ 3967258 (+)
CI01000027_04213570_04229519 PTPN23, PTPN23A coding downstream 108078 4212498 ~ 4229677 (+)
CI01000027_04350540_04357555 SHE coding downstream 245594 4350014 ~ 4358099 (+)
CI01000027_04381523_04393547 CHRNB2B coding downstream 277103 4381523 ~ 4394114 (+)
CI01000027_04470309_04483532 NA coding downstream 365725 4470145 ~ 4483559 (+)
CI01000027_04485614_04488056 NA coding downstream 379471 4483891 ~ 4488056 (+)
G139023 NA non-coding upstream 187521 3865013 ~ 3865517 (+)
G139027 NA non-coding upstream 212596 3838205 ~ 3840442 (+)
G139016 NA non-coding upstream 228603 3824046 ~ 3824435 (+)
G138958 NA non-coding upstream 265188 3787355 ~ 3787850 (+)
G139002 NA non-coding upstream 308800 3744009 ~ 3744238 (+)
G140381 NA non-coding downstream 28418 4132838 ~ 4133069 (+)
G140384 NA non-coding downstream 35519 4139939 ~ 4140428 (+)
G140386 NA non-coding downstream 42068 4146488 ~ 4146794 (+)
G140391 NA non-coding downstream 63989 4168409 ~ 4168635 (+)
G140392 NA non-coding downstream 65643 4170063 ~ 4174661 (+)
G138953 NA other upstream 532973 3502072 ~ 3520065 (+)
G138915 NA other upstream 566391 3484387 ~ 3486647 (+)
G138515 NA other upstream 2376178 1664408 ~ 1676860 (+)
G138436 NA other upstream 2545222 1506961 ~ 1507816 (+)
G138290 NA other upstream 3053857 995970 ~ 999181 (+)
G140436 NA other downstream 632978 4737398 ~ 4774262 (+)
G140440 NA other downstream 675997 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 944503 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 964932 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 967642 5071693 ~ 5073136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G115003 cpne4a,LOC107592564,LOC107600547,LOC107666882,LOC107713817 unknown NC_056714.1 CM032083.1 21012607 ~ 21017105 (-)