CI01000027_03976548_03994948


Basic Information

Item Value
gene id CI01000027_03976548_03994948
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3975433 ~ 3995028 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_03976548_03994948.mRNA
CTATAAATGAAACACGACACGGATGCGATTTGGTTCAGTGAGAAGGCTGTGATACGCTGATCAGGTAAGAAAATCTATATGTGAAGCTTACTGATAGATTTTAGGGGTGTATAATGATCATAAGCTAAATGAAGAATGACAACATCCTGTGGAATTTGTACATGCTTATGTTTTTTGTTTTTTTGAGTGATTTTTTTGATATTAATGAAACTTTACAAAATAACTATAAAGTAGAAATAGCAACATGATGCTTAGTATTATATGAGAAATTATGATTGTACCCTGTACTCTATTTGCCTGAGAGAACAAGAACTATTTTATAATGAAGAATTTTGAAGTAGGATATTTATTAGTTCATTCTCATTCATGAAAGTGCTTGAAAACAATCTTCATGAATATTAAAAAAAAAGGACAATAGTATTCCTATTGTTTTATTTACATAAAAATGATATAAATGCATTATTTACATTTTAAAATCAGTTTCTTGTGTTGTGATGTCAAGTTATTTGTCTCTTGTAGTGCTTTATGCATCAAGTGTTGACATCTGAGTGAGTTCGTGTGTTTTCTGCATGGTCTCCTGTTATGTGATGTTGTCGATTGTCTATGCACTTTGTACTTTGTACATTTCATTATATTAATCACATAAAACAATGTAAATAAAGATAAGTTTGCATAATTTTTTTTAAGTTGTTACAATTTAAAATAATTTAATTGTCAGAGTGATGGCAGACTTAGTCATGACAACTTGAAAAAGAACTTTTTGAGCAATGTTGCTGGGCATTGTTGTCGAACAATGTTGCTTCGGCACTTTCCATATTGAGAATGGGAATCTGAATACTTTAGATCGAAATTTGTTGCCCATTCTCAATGCCCAAGCAACATCGCTCAGCAAAATTGCCCGGCAACATTGCTCAAAAAGTTGCCCCGCGTATCATCACCTTTAGAACAGAACAGAAAAGAGTTATATATGCTGACGTAAGAACAAGTGCACCTGTAACTCTTACATTATTGTTTTGCATAGTTCCAAAACAAGCAGCGTAAATAATATTGCAAAGTCATAATACTGTCATGTGGCATTTTTTTTTTTTTTTTTGACTAATAGCAGGGCAGAAGTTATGTTGACTATTCTTCTGATAACAGCTTTTATTGGCCAAGCATTCCCAGAGAACATAGCCTTCTACTATCCAGTTAATCCAGTGAATTCTCTCAATATCACCGCTCTCTATGCCGACACCGGGGTGACAGTCTCCACCTCAGACGATCGGACATACCAGGACACACTGCCGGCAGGAAAACCTGTAACTGTGACCCTGCCACAGGGTATTGAGGAATACCGTTTCGCTCAAACTCTTCGGACCGTCAGAATCAGCAGCACGGACCACATCGTGGTGCAGTCGATCAGTCAGCGAGGAGATAGTGTACAAACTAATGTCGTTCAGCCTCTGAAAAATCTCGGTACGTTTTACTCCATCCCCTCGCTGAATTACAGCATGATGATTAATACTTTCTATCAGTCGACAAGAAATTTCAGCAAGATATACAGCACCTTCAGGCTGGTTATTATCAATGGAGTAGATATAAGTAATTATGTCACAATTGTAAAAATGGCTAAAAACAAGATGTACACACTTGATCCGTACGCCGTTCTCCAGCTCCAAACCGACGGGACAGAAATTGCAGTTAGATCTGATTATAGAGTAGCTGTGATGATGACCCATCCATGTGTAGAAATGGCAGAATGCAGATGCAACATGGTGGTGAACCAACTTTACCCCAACTCTCAGTGGGATAGCAGATTCGTTGTACCCTCAATACTGAACACAAGTAACGTTTGGCTACATCTGACGTCCTCAACGAATATCACTGCCAGTGGCAGGGATCTAGAATTGGGTACTTTGGAAGCCAATTCCTCAAAACTCCTGTCTCTCCCATCTTTGCAGTCAGGATCTCAGTTCATCAACACATCTGATCCTGCTTCCCTCAGGCTTGTCGGTCCAGGCTTCCTCATTGAACCAATCCCACAATCCAGGTTCTCTGCATGCTACCTAGTAGTGCCTGTCAGCTCGACAGATGCCAAGGCCTTAGTGATAGCAGAAACGGACTACAGGGATAGTGTGTATATAGATGGTGATTTGCTTTCATCTGCTAAATGGAGCACCATCGCCAATTCAGAGTACTCATCGGTTTTAGTGTCAGTTAACGGCATGCATGTCATTTGGCATCCATCCACAAAGATCGCCGTGTATGTGTTTGAGAAGGGCACAAATGTGTATGGAGGCCCAGCTATATCTTTAAGTGAAAAACCAGACCCTTTAGGCTGTGCATTGGTCCCTTCCAAGTTCAACATCATCTTTAGACCTCAAACCTGGCCTGAATCCCATCAAAACTGTATGCTCATAAGTGACGAGCTTTTCAGTCCGAGCAATAAAGCGACCCAAATGGAGATGGTCGAAATTTTGAATAGTGAAGGTTTAAACGAGAGGCTCTGGATCGGACTGCGCCGTAGTCTGCTCACATTAGAGTGGTATCGGCAGAAGGATTTTTTTCCATCTAGGCTGCTCAAATCAACCGAGAACCACGGAGTGACAGTGATGCTGTTCAATCTTCTCTTCATGTCACTGGTTTGCCAGGGGCTGTCAGTGGAGAGCTATGGAAAAGACTTTATCACGGCATTCCCGGAGAACATTGCCTACTACCATCCACAAAAGTCCTCCAACACGCTCCAAATTACTGCTTTCTACAACGACACCGCCGTCTCAATCACCATCAACCACACAAACGTATATAATGAAAAGCTACAACCTGGGCAGACTAAAACTGTACATTTTCCCAAGTATGTCAAGCAATATCAGTTCACACGCTCCCTTTATTTTGTCCGAGTCAATAGCACCAAATTGATCGTGGTGCTTTGGATCAGTCAGCGAGGGGACAGCGTGCAGTCTTATTTTGTTCAACCTGTAAAGAATCTTGGAAAGCTGTATTCAATCCCCTTTAACAATTACAATCAGATGATGGCGTCCTCTTCCAATATGGCAGATCTGTTAGCTCCGGACAGCTGGAGATACAGTTCATTCAGGCTGATCATTATCAATGCTGAGAACATCATGAACGCCATCTCTATCCAAACAGTTGGCATGAATGCTCAAAGAGACTTTAACTTTACGCTCAGCCCTTACGAACTTTTCCAGTTCCAAACCAACGGTTCAGAGATTAAAGTGTACTCTAGTAACACTGTGGCTGTGCTGTTGACTCATCCATGTGTAGAAGCTACCGTGTGTGATTGTAACATGGTGGTGAACCATGTTCTCCCCCAAAATCTGTGGGGTCAGACTTTTGTTGTGCCATCGTTGAAGAACCTGAATTCAACTTGGCTGCAAGTGACATCCACAATGAAGGTCATGCACAGAGGACAGAATATAAAAATTCTAGCCTCAAATTCTTCAGATCTAATTTCTTTCCCGTACCTTGAAAGTGGATCTCAGTTCATCAGTGCATCAAATAATGTGTCCATCAGGCTTATCAGTCCAGGCCTCATCTTAGAACTCATGCCAGAAACCATGTTCGCTGCCTGTTACCTGCTGCAGATAAACTCAACAGAAGGTGAGGCCTTTATCATAGCTGAAACAGCCAGTAGGGGTGGTGTTCATATAGACGGTGATTTGCTTTCATCCACTGACTGGAAAACCATTAGCAGTTCAAACTACTCCTCTGTATCAGTGCCGATTAGTGGCACGCATGTCATCTGGCATCCAACCTCCAGGATCGGAGTGTACATGTTTGAGAGGATGGAAAGTGGAATTCCTTACGGAGGCCCAGCTGTGATTTTAAATGAAGAGCCAGATCGTGATGGCTGTATGGCAGATCCTGCACAATATAAGACCACTACTGATGTCATGACGTGGCCCGAATCCCATGATTACTGCATAAATATAACTTTCCAGATGAGCACACCAAGCAGCGCAAGGGCCCAAAAGGAGATGACCAACTTTCTGCAAAAAGACGGCGGTCCCGGGTACTTCTGGATCGGGCTGCGGAGCAGTCTGCTCACATTAGAGTGGTACTGGAAGAACGGCAATGGCAGCGAATACAATGTGAACTACACAAAGTGGGCCGTTGGGCATCCAGAGAAATCCCGGAAGGCTTTGTGTGCTTCTGTGTCGCAGGATGCCAACAAGGATTTCTCCTGGAAGAGTCTTACAGTAGTGAGCTATGGAGACAACTTCATCACTGCCTTTCCGGAGAACCTAGGTTTCTTCTATCCATATTATCTCTTCAACATTCTAAAAGTCACAGCACTTCATGACAACACTAACTTCACAGTCTTCTACAAAAACACACAGAAAGTCATACAAATCCAGCGGTCAGGGCAGGCCATGAGTGTGTATTTTCCAGAATCTGCTGAGGTAAATCAACTAGGCTCTTCAAATGCATCTGTCAGAATTACCAGTGACAAAAACATCACAGTGGTTTCTGTAAGTAAGCGGAACACAAGCATCCAGACCAATGTCGTCCAGCCCACGGTAAACCTTGGTACAGACTATATGATCCCTATGCTGGATTACCCAGAGTATCTTGCATCCTTCAACCTACCTAGTCTTGTCAGTACAACCATGAGATACAGCTCATTCAAGTTACTCATTATCAATGCGGTGGACAGTCAAAACAGCATCACTGTAGTCAAGCAAACATCAACAGATGTTCAAGAAGAGACGTTCAATATCGACTCTTACCAGCTGGTCCAGCTTCAGACCAACGGTTCCGTGCTGAGGGTCAAATCTAGCAAAGAAGTAGCTGTGATATTGACCCACCCGTGTGTGGAGACTGCAGACTGTAACTGTAACATGGTAATGAATCAGATTCTTCCCACAAAGTTTCAGGGTCGGAGCTTTATCGTACCTTCCATCTTCAACGTGGCCGAGACCCGGTTACTTGTGCTGTCAGAAAACTCGTCTTCGCTGCTTCACGATGGTAACCAGATACAAGCTACTTCCTCAGCTCTTCTGCCGTTTTCAAACCTGGAGACATCTCAACTGGTAAATTCTTCAGACAGAGTGTCCCTCAGACTTGTCAGTCCGGGCCTCATTGTGGAATTGATCCCAGACACCATGTTTTTTGCTTGCTACCTGCTGCAGTTTCATTCATCCTATGGCAAGGCTGTGGTGATAGCTGAAACAGACAGCAAAGATGATGTGCGCACACATAAAGGTTTGCTTTCAGCATCTGAATGGACTGCAATTGCTGGCACAAAGTACTCTTCCACTGTAGTAACTATACCAGACCTCAGGGCCACAGTCTGGCATCCAACCTCAAAGATTGCTGTTTATATGTTGGAATACATGTCTGAGAAAGTAGTTTTAGGAGGCCCAGCTATACCCATCAGTGAAAAACCAGATCTTCATGGCTGTATGTTGGTTCCTGGAGCATTTTCAGTTGGACGTGACCCTCTGAATTGGACGGAGTCGCGTGAGTACTGCATGATTAATGGAAATCAGTTTGCCTGTCCTGTAAGCAAAGCCGTCCTAAAGGACATGGCTGATAACCTGACCACAGAGGACGGGCATGGCTGGATCGGTCTCCGCCGCAGTCTACTAACTACGGAGTGGTACTGGCAGGACGAGTATGAACCCCCAACTAATGTCAATTACGTTCACTGGGATGATGGGCATCCTTTGGGCCTTTTGAAGGGCTTATGTACTTCAATGTCCCTGGACTCTAAAAATGATTTCAAATGGCACAGTGCACGTTGCTGTGATAAAAAGAAGCCTGTCTGCTACAAAAGGCCAGCATACCTCAATCCTTCACAAGATCGGTTTACTTTTTTCCTTAGTGTTTAGTGCTAATTAGTAATGCTATTCTTCAGGTTCATTAAGTTTATATTTGTATCACCACCTGCATATCTGAGCTGTATTTTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_03976548_03994948.mRNA True 5914 mRNA 0.43 8 3975433 3995028

Neighbor

gene id symbol gene type direction distance location
CI01000027_03941809_03967258 ATP2C1 coding upstream 8175 3941809 ~ 3967258 (+)
CI01000027_03907257_03920389 CEP85 coding upstream 54445 3907257 ~ 3920988 (+)
CI01000027_03879680_03890591 NA coding upstream 83696 3879274 ~ 3891737 (+)
CI01000027_03863467_03864594 PSMC4 coding upstream 110556 3862496 ~ 3864877 (+)
CI01000027_03851507_03856447 PSMC4.L, PRS6B, PSMC4 coding upstream 118916 3851507 ~ 3856517 (+)
CI01000027_03998691_04000730 RPP25L coding downstream 3140 3998168 ~ 4000834 (+)
CI01000027_04012798_04014351 NA coding downstream 17719 4012747 ~ 4014351 (+)
CI01000027_04015806_04037491 NA coding downstream 20702 4015730 ~ 4038774 (+)
CI01000027_04054186_04103227 NA coding downstream 58010 4053038 ~ 4104420 (+)
CI01000027_04213570_04229519 PTPN23, PTPN23A coding downstream 217470 4212498 ~ 4229677 (+)
G139023 NA non-coding upstream 109916 3865013 ~ 3865517 (+)
G139027 NA non-coding upstream 134991 3838205 ~ 3840442 (+)
G139016 NA non-coding upstream 150998 3824046 ~ 3824435 (+)
G138958 NA non-coding upstream 187583 3787355 ~ 3787850 (+)
G139002 NA non-coding upstream 231195 3744009 ~ 3744238 (+)
G140381 NA non-coding downstream 137810 4132838 ~ 4133069 (+)
G140384 NA non-coding downstream 144911 4139939 ~ 4140428 (+)
G140386 NA non-coding downstream 151460 4146488 ~ 4146794 (+)
G140391 NA non-coding downstream 173381 4168409 ~ 4168635 (+)
G140392 NA non-coding downstream 175035 4170063 ~ 4174661 (+)
G138953 NA other upstream 455368 3502072 ~ 3520065 (+)
G138915 NA other upstream 488786 3484387 ~ 3486647 (+)
G138515 NA other upstream 2298573 1664408 ~ 1676860 (+)
G138436 NA other upstream 2467617 1506961 ~ 1507816 (+)
G138290 NA other upstream 2976252 995970 ~ 999181 (+)
G140436 NA other downstream 742370 4737398 ~ 4774262 (+)
G140440 NA other downstream 785389 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 1053895 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 1074324 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 1077034 5071693 ~ 5073136 (+)

Expression


Co-expression Network