CI01000027_03851507_03856447 (PSMC4.L, PRS6B, PSMC4)


Basic Information

Item Value
gene id CI01000027_03851507_03856447
gene name PSMC4.L, PRS6B, PSMC4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3851507 ~ 3856517 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_03851507_03856447.mRNA
ATGGAGGACGGCGGAGTGTTGGTTGAGAAACCTCAGGATGATGTGCCGGCCCTGCTGAATTCAAGGCCCCAGACCGGCTTGTCTTTCTTGGCTCCTGAACCAGAAGATCTGGAGGACCTTTACAGCAGATATAAGAAGTTGCAGCAGGAGCTGGAGTTTCTGGAGGTGCAGGAGGAATATATTAAAGATGAACAGAAGAATCTGAAGAAGGAGTTCCTTCATGCCCAAGAGGAGGTGAAGAGGATACAGAGCATCCCTCTGGTCATTGGACAGTTCCTGGAAGCAGTCGACCAGAATACTGCCATTGTGGGCTCGACCACAGGCTCCAATTACTATGTTCGTATTCTGAGCACAATTGACAGAGAGCTGCTGAAGCCCAATGCCTCTGTTGCGCTGCACAAGCACAGCAATGCTCTGGTGGACGTTCTTCCTCCAGAGGCTGACAGCAGCATCATGATGCTCACTTCAGATCAGAAGCCAGACGTGATGTACGCAGACATCGGAGGAATGGACATCCAGAAACAGGAAGTGAGGGAGGCCGTGGAGCTCCCTCTCACACATTTTGAGCTCTATAAACAGATTGGTATTGACCCACCCAGAGGAGTGCTCATGTATGGCCCTCCTGGCTGTGGCAAGACTATGTTGGCAAAAGCTGTGGCTCACCACACTACAGCGGCCTTTATTCGTGTGGTGGGATCTGAGTTTGTGCAGAAGTATCTCGGAGAGGGTCCACGCATGGTGCGAGATGTCTTTCGACTGGCCAAAGAGAATGCCCCAGCCATCATCTTTATTGATGAGATTGATGCCATTGCTACCAAGCGTTTTGATGCACAGACTGGAGCTGATAGAGAAGTGCAGAGAATCTTGCTTGAGCTCCTTAATCAAATGGATGGGTTTGACCAGAATGTGAATGTGAAGGTTATCATGGCCACCAACAGGGCTGACACACTGGACCCAGCCCTTTTGCGCCCAGGTAGACTGGACCGTAAGATTGAGTTTCCTCTGCCTGACCGTCGACAGAAACGTCTGGTGTTCACCACCATTACCAGCAAGATGAACCTCTCCGAAGAGGTTGATCTGGAGGACTGTATCCTCTTGACCCTAAATTAAGTTATTATCATTATGAATATGATTATATTTAATCATTTAGTAGAAGAAATTAGGAAAACAATGCATGAGA

Function

symbol description
psmc4 Predicted to enable ATP binding activity; hydrolase activity; and proteasome-activating activity. Predicted to be involved in positive regulation of RNA polymerase II transcription preinitiation complex assembly. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytosolic proteasome complex and proteasome regulatory particle, base subcomplex. Predicted to be active in synapse. Orthologous to human PSMC4 (proteasome 26S subunit, ATPase 4).

GO:

id name namespace
GO:0001824 blastocyst development biological_process

KEGG:

id description
K03063 PSMC4, RPT3; 26S proteasome regulatory subunit T3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_03851507_03856447.mRNA True 1180 mRNA 0.49 9 3851507 3856517

Neighbor

gene id symbol gene type direction distance location
CI01000027_03845911_03849635 NA coding upstream 1837 3845911 ~ 3849670 (+)
CI01000027_03798333_03830899 GRAMD1A coding upstream 20364 3797944 ~ 3831143 (+)
CI01000027_03783310_03784541 NA coding upstream 66966 3782922 ~ 3784541 (+)
CI01000027_03776983_03781753 NA coding upstream 69616 3776138 ~ 3781891 (+)
CI01000027_03771203_03774232 ETV2 coding upstream 76988 3769395 ~ 3774519 (+)
CI01000027_03863467_03864594 PSMC4 coding downstream 5979 3862496 ~ 3864877 (+)
CI01000027_03879680_03890591 NA coding downstream 22757 3879274 ~ 3891737 (+)
CI01000027_03907257_03920389 CEP85 coding downstream 50740 3907257 ~ 3920988 (+)
CI01000027_03941809_03967258 ATP2C1 coding downstream 85292 3941809 ~ 3967258 (+)
CI01000027_03976548_03994948 NA coding downstream 118916 3975433 ~ 3995028 (+)
G139027 NA non-coding upstream 11065 3838205 ~ 3840442 (+)
G139016 NA non-coding upstream 27072 3824046 ~ 3824435 (+)
G138958 NA non-coding upstream 63657 3787355 ~ 3787850 (+)
G139002 NA non-coding upstream 107269 3744009 ~ 3744238 (+)
G138985 NA non-coding upstream 225899 3625313 ~ 3625608 (+)
G139023 NA non-coding downstream 8496 3865013 ~ 3865517 (+)
G140381 NA non-coding downstream 276321 4132838 ~ 4133069 (+)
G140384 NA non-coding downstream 283422 4139939 ~ 4140428 (+)
G140386 NA non-coding downstream 289971 4146488 ~ 4146794 (+)
G140391 NA non-coding downstream 311892 4168409 ~ 4168635 (+)
G138953 NA other upstream 331442 3502072 ~ 3520065 (+)
G138915 NA other upstream 364860 3484387 ~ 3486647 (+)
G138515 NA other upstream 2174647 1664408 ~ 1676860 (+)
G138436 NA other upstream 2343691 1506961 ~ 1507816 (+)
G138290 NA other upstream 2852326 995970 ~ 999181 (+)
G140436 NA other downstream 880881 4737398 ~ 4774262 (+)
G140440 NA other downstream 923900 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 1192406 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 1212835 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 1215545 5071693 ~ 5073136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location