CI01000027_03776983_03781753


Basic Information

Item Value
gene id CI01000027_03776983_03781753
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3776138 ~ 3781891 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_03776983_03781753.mRNA
ATATAAAATGAGCAAAAGGGTTTTGGGTTTTGCACTTTTCAGACGGTCCCTTCAGACTTGCCTCTCCGCCGCCTGCAGAGACCAATTTATATATTATAAAGCACATTTGTGGAAAATTGGGTTGTTGTAGCTCGTTTTCTAGGTTACTATGATTGGAAATAGCTGCATTTGTGTTTTAACAACGTTTAGCTCACGAGTTATTGATCCGGGAAGTTCGAATCTGTGAATATATTGCCAACTTTACTGAACTCCTTGACTTAAGCACTGACTGCATTTCTTTATATTTATGTCCAAGTTCAAACTCTATGAACCGCGCATTATTACTGGTGTGTATTATTAACGTATGGAACTAACCGAAACACTACTGCCAGCCAGCGGGACATTAAAGAGGAAGTGTTTGTCCGAGATCACAGCAAAAAACAAAAGTTTTGCGAGGGAACGCAAATATCTTTGCGTGGGAACGCAAAGTTTCTCGGGGGAACGCAAGAGTTTTGCGAGGGAACGTAAAAGATTAAAAAAAAAAATCCTCCCATCCCAATTTTTTTCCACCTCCACGTATAAAAAGAGAAGGAAGTCGTGTCTGTAACCTGCAATCATGTCATAAATCATAAAATCATGTTGTTTATAATGAATGGAGAATATCTCGTGTTTTTTCCGTGGGTGTTTGATCATTTATCGGCGCCTATGCAATGTCACCTCTAGGTGGAGTATGGATTGCTCAATAAAAAAACAAAAGCGAAACAAACCTTCAGAAAACACACTGCGATCACAGGAGGCGTGTGTTCAAGCCTCAGTCAAAACATTTATCAGCAGCCACTGGAAAAGGCAGGAAGCTTTGAGGAACCATGCCGAAAACTATTAAGGATCACCTTGAGAATATTTTTGAGGATCTGGGGGAGGGAAATCTTAAAAAGTTTAAAATCAAATTGCGCGATCGGAAGGAAGAACCGCGCGTACGACAAGCAACAATTGAAAAAGTTAAAGATTCTCTAGATCTCGCTGATTTAATGGTGAACACTTTCACATCGACAGGCGCTGTTCCTGTAACACTCGAAATATTAGAGGTTATTAACTGTCATGAACTGGCAGCGGAGCTCAGAGAGAACATAGGAGACGGTTTGCCAGTGGCTCGGCCACCTTTGGATGTAGTTGACGCAAAACCAGTTCAGGGTCCAAAAGTTGATGCTGTTCCTCAGTCATATGATCCTGTTCTGTCAGATGATTGGCAGAGAGAATCGCAGATTATTCCATGTAGCCAACAATTTAAAATAAAAATTCTTAGTGAAAATGGACAAGAGGCAAGTATTCATCAAATATTATTCTATTCATCAAACATTTATGAAGCAAAAGACAGGTCTGCAAGAAAACGTCTTGCCCTGCTTATCAACAATAGAGATTTTGACGAAAAGGCTATGACCAGGAGAGGGGCGGAGAGAGATGAAGAAAACATGGAATGGCTGTTAAATCAACTGGATTATGAAGTTGTCAAGTACAGCAATCTCTCTGGCCAGGAAATGAAGCAAGCAGTCAAGAACTTTGCTGTGTGTCAGGAACATGCATATTCAGACAGCACCTTTGTGGTTATAATGTCCCACGGAAAGAGGGATGCTATTTTGGGTGTCCATCATACAACAGACAACCCCGATACATTCCCTGTTGATGATATCTACGTTCATCTGAACTCTCAGAATTGTCCAGCTCTGCTTAATAAACCAAAGGTTATTCTCATCCAAGCCTGCAGGGGAGGGGAGCATGGCCGCGTGTGGGCCAGTGACGGTGAACCCGATAAGTCAATGGAAATAGAGGGCGATGACTTTGTGCACAAGGAGAAAGACTTTATTTCTCTGATGTCCTGCACCCCGGACACCAAATCTTACAGGCATGTTCAGAATGGAACGTTTTACGTCCAACTGATAGTGGATGTGTTCACGAAACATGCACACGAGGATCACATTGAGGAATTGTTCAGGAAGGTTATAAGACGTTTTGACAACGCAGATATGATTGGAAGCTACAGGCAAATGGCGTGTAAAGACAGAGCAACGCTGGCAAAGTTGTTCTACCTGTTCCCTGGACTCTGATTTCCAAGTTGTACATTCTTTTCTCTCCTTATCTCTGAATTCTATAGACCCTCGTCTGCCTTTGTATCTCCAGCAAATCCTGTAAAGTCTTTCCAGATGTATGAAAATAGTTATTTCAAAAAAAAAGAAAGACCTTAA

Function

NR:

description
Caspy2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_03776983_03781753.mRNA True 2219 mRNA 0.41 7 3776138 3781891

Neighbor

gene id symbol gene type direction distance location
CI01000027_03771203_03774232 ETV2 coding upstream 1619 3769395 ~ 3774519 (+)
CI01000027_03744339_03748166 NA coding upstream 27972 3744339 ~ 3748166 (+)
CI01000027_03736903_03741917 NA coding upstream 33456 3736903 ~ 3742682 (+)
CI01000027_03718436_03732820 DYRK1A, DYRK1B, DYRK1A.2.S, DYRK1A.2 coding upstream 42368 3718436 ~ 3733770 (+)
CI01000027_03680285_03687497 ALKBH8 coding upstream 88622 3680285 ~ 3687516 (+)
CI01000027_03783310_03784541 NA coding downstream 1031 3782922 ~ 3784541 (+)
CI01000027_03798333_03830899 GRAMD1A coding downstream 16053 3797944 ~ 3831143 (+)
CI01000027_03845911_03849635 NA coding downstream 64020 3845911 ~ 3849670 (+)
CI01000027_03851507_03856447 PSMC4.L, PRS6B, PSMC4 coding downstream 69616 3851507 ~ 3856517 (+)
CI01000027_03863467_03864594 PSMC4 coding downstream 80605 3862496 ~ 3864877 (+)
G139002 NA non-coding upstream 31900 3744009 ~ 3744238 (+)
G138985 NA non-coding upstream 150530 3625313 ~ 3625608 (+)
CI01000027_03570192_03600805 CSPG5A non-coding upstream 176327 3570192 ~ 3600805 (+)
G138954 NA non-coding upstream 261465 3507522 ~ 3514673 (+)
G138918 NA non-coding upstream 278219 3492432 ~ 3497919 (+)
G138958 NA non-coding downstream 5464 3787355 ~ 3787850 (+)
G139016 NA non-coding downstream 42155 3824046 ~ 3824435 (+)
G139027 NA non-coding downstream 56314 3838205 ~ 3840442 (+)
G139023 NA non-coding downstream 83122 3865013 ~ 3865517 (+)
G140381 NA non-coding downstream 350947 4132838 ~ 4133069 (+)
G138953 NA other upstream 256073 3502072 ~ 3520065 (+)
G138915 NA other upstream 289491 3484387 ~ 3486647 (+)
G138515 NA other upstream 2099278 1664408 ~ 1676860 (+)
G138436 NA other upstream 2268322 1506961 ~ 1507816 (+)
G138290 NA other upstream 2776957 995970 ~ 999181 (+)
G140436 NA other downstream 955507 4737398 ~ 4774262 (+)
G140440 NA other downstream 998526 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 1267032 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 1287461 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 1290171 5071693 ~ 5073136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010956 caspa coding NC_007127.7 CM002900.2 41993551 ~ 42004544 (-)