CI01000027_03680285_03687497 (ALKBH8)


Basic Information

Item Value
gene id CI01000027_03680285_03687497
gene name ALKBH8
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3680285 ~ 3687516 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_03680285_03687497.mRNA
ATGGAGAGCAGCATGGAGAGCTCAAGAAGTGTCAGAAAAACTAAAGAGGAGAAAAAACTGCTTCGAAGGCAAATTAAAGCCAGTCACATATTACTGAAACACGAGGGTATAAGCACAGTGTCACATCCCACAAAGCATCTGGTGGTGTCTAATGGAGGTTTGGGGAATGGAGTGAGCAGAGAGTCGCTGCTGGATGTTCTTAAAGAGGGAGGTACTGTTGAGAAGCTCCTCACCCCTCCAGCGAAACCATATGCATTTGTAACATATTCATCAGTTGAAGCAGGCCAGAATGCATATACATTTCTCAATGGACGAGCACTGCAGTGTCAGGAGCAAAGTGTGACGCTTTATTTCAGCTATGTCGAGAAAGTGGACGGTGACAGGAGTGTGTCCTGTGCTTTGCCTCCTGGTCTGTCTGTGTTGGAGGATTTTGTCTCTCCAGAGGAGGAGCTGCAACTGCTGCAGGCTGTTGATTGGACACCATATACTGATGATGTCACGGTGCAGAAAGCTTTGAAACACAGAAGTGTGAAGCATTATGGGTATGAGTTTCGGTACGATAATAATAACGTGGACAAAGACAAGCCCTTACCAGGTGGCCTGCCGGCGGAATGTGATGCTTTACTACAAAGATGTTTGGCTGATGGCCACATAAGTGTCCTCCCAGACCAGCTCACTGTAAACCAATACCAAAGTGGACAAGGAATTCCTCCTCACGTGGACACTCACTCTGCATTTGAAGACACCATCCTTTCCTTGAGTCTTGGTACAAAGACAGTAATGGACTTTAAACATCCTGACGGCAGTTCTGTCGCTGTGGTGCTGCCAGAGAGAAGTCTGCTAGTGATGAAAGGAGAGAGCCGTTATCTGTGGACTCACGGCATAACACCTCGGAAGTATGATGTGGTACCAGTGATGGAGGCTGGAGGGTCAGGGGTCATGACCTCTGACTTGAGTAATCTGACCCTGAGCCGCCGTGGTACCAGGATATCGCTGACGTTCCGAAAAATCCGGCATACACCTTGCAACTGTGCCTATCCATCTGTATGTGATAGCCAGCAGCTGCCCTCTCTACCCACCGTGCCGGTTGCTGAAGGCGATGCGCGTCGTTTGGAGTCACAGTATGTCCATCAGGTCTATGAAGAGATTTCCTCCCACTTCAGCAGCACACGACACTCACCGTGGCCTCAGGTGCGAGATTTCCTACTGTCCCTGCCACCTGGTAGTGTTCTGGCAGACATCGGATGCGGCAACGGCAAATACTTGGGGATCAACCCTGAAGTGATGTCGGTGGGCTGCGACCGCAGTGTTAATCTGGTGCAGATCAGCATTGAACGAGGTCATGAGGCATTCGTGTCAGATGCACTGTCTGTCCCTCTGCGCAGTGGCAGCTGTGATGCCTGCATCTCCATTGCAGTCATTCATCATTTCTCCACACAGGAGAGAAGACAGGCCGCTGTCAGAGAGCTGATCCGGTTATTAAAGGTGGGAGGAAGAGCTCTGATCTATGTTTGGGCTATGGAGCAGGAATACAACAACCAGAAATCAAAGTATCTGAAAGAAAGAACAACTGAAACTAGCATGGAGAATGGCAAGGCGCTTAAAACCAAAGAATATAAGTCGAACCAACAGGAGGAGCATGATGGGAAAATGAGATCAGACATGAAATTCACAGAGGGAGGTTTTGGGAATGCGACACAAGCCAGAATCCATGTCCATACTAACCGCACAACTTTCCTTTCACAAGATCTCCTGGTGCCGTGGCACTTAAAAGGTAATGCGGACAAGAGCAAGGGAGCAACGAGTAGTAGCACAGATGTTCCTGTGGACAACACAAGCCAGAGGCCTGTATTTCACCGCTATTATCATGTCTTCCAGCAGGGAGAGCTGGAGGAACTGTGTTTAGGTGTGGCAGGTGTTAAAGTGCTTAGGAGCTACCACGATCAGGGTAACTGGTGTGTGGAACTGGAGAAGACTCATTATACCTCGTCAAAGGATGATATTGCACAGGACAAATAAAAAAATTCTAGTTAATTGA

Function

symbol description
alkbh8 Predicted to enable tRNA binding activity. Predicted to be involved in tRNA wobble uridine modification. Predicted to act upstream of or within methylation. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human ALKBH8 (alkB homolog 8, tRNA methyltransferase).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10770 ALKBH8, TRM9; alkylated DNA repair protein alkB homolog 8

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_03680285_03687497.mRNA True 2038 mRNA 0.49 11 3680285 3687516

Neighbor

gene id symbol gene type direction distance location
CI01000027_03675758_03678539 FBL coding upstream 1636 3675758 ~ 3678649 (+)
CI01000027_03660816_03671233 KCNJ9, KCNJ6, KCNJ5 coding upstream 8770 3660816 ~ 3671515 (+)
CI01000027_03610825_03621755 PPOX coding upstream 58393 3610743 ~ 3621892 (+)
CI01000027_03570192_03600805 CSPG5A coding upstream 79480 3570192 ~ 3600805 (+)
CI01000027_03524553_03546701 SMARCC1, SMARCC1A coding upstream 133584 3523607 ~ 3546701 (+)
CI01000027_03718436_03732820 DYRK1A, DYRK1B, DYRK1A.2.S, DYRK1A.2 coding downstream 30920 3718436 ~ 3733770 (+)
CI01000027_03736903_03741917 NA coding downstream 49387 3736903 ~ 3742682 (+)
CI01000027_03744339_03748166 NA coding downstream 56823 3744339 ~ 3748166 (+)
CI01000027_03771203_03774232 ETV2 coding downstream 81879 3769395 ~ 3774519 (+)
CI01000027_03776983_03781753 NA coding downstream 88622 3776138 ~ 3781891 (+)
G138985 NA non-coding upstream 54677 3625313 ~ 3625608 (+)
G138954 NA non-coding upstream 165612 3507522 ~ 3514673 (+)
G138918 NA non-coding upstream 182366 3492432 ~ 3497919 (+)
G138915 NA non-coding upstream 193638 3484387 ~ 3486647 (+)
G139002 NA non-coding downstream 56493 3744009 ~ 3744238 (+)
G138958 NA non-coding downstream 99839 3787355 ~ 3787850 (+)
G139016 NA non-coding downstream 136530 3824046 ~ 3824435 (+)
G139027 NA non-coding downstream 150689 3838205 ~ 3840442 (+)
G139023 NA non-coding downstream 177497 3865013 ~ 3865517 (+)
G138953 NA other upstream 160220 3502072 ~ 3520065 (+)
G138515 NA other upstream 2003425 1664408 ~ 1676860 (+)
G138436 NA other upstream 2172469 1506961 ~ 1507816 (+)
G138290 NA other upstream 2681104 995970 ~ 999181 (+)
G140436 NA other downstream 1049882 4737398 ~ 4774262 (+)
G140440 NA other downstream 1092901 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 1361407 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 1381836 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 1384546 5071693 ~ 5073136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010961 alkbh8 coding NC_007127.7 CM002900.2 42156064 ~ 42175617 (-)