CI01000027_03660816_03671233 (KCNJ9, KCNJ6, KCNJ5)


Basic Information

Item Value
gene id CI01000027_03660816_03671233
gene name KCNJ9, KCNJ6, KCNJ5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3660816 ~ 3671515 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_03660816_03671233.mRNA
TTGGAGAGCTCCAGCTACTGTGTTGGATCGGTGACGACGTCTACGGCTTCCGGGCCATGAGTAGCTTTAAGGGCCAGGATGTTGAAAAACAGGGCATCAAGCTGCCAAAAAAATGGATTGATTCCAATGATAAAATCCCCACAGACCGTACAATGGTTGTTGGGGGAAGTGTGGGAGGAGGAGACGCTTCTGATCCTTCAGGATGTCCGCTGAAGAAACGGCGCCAACGCTACGTGGAAAAGGACGGCAAGTGCAATGTCCATCATGGAAACGTGCGCGAAACATACCGTTACCTGACAGACATCTTCACCACGCTAGTGGACTTAAAGTGGCGCTTCAATCTGCTGGTCTTCACGCTGGTCTACACCACCACCTGGGTGTTTTTTGGCCTCATTTGGTGGCTCATCGCCTACATCCGTGGAGATCTGGACCATACTGATGACGCCAAGTGGACACCTTGTGTGAATAACCTTAATGGCTTCGTCTCTGCGTTCCTTTTTTCCATCGAGACCGAGACCACCATCGGTTATGGGTACCGTGTCATAACGGACAAATGCCCCGAGGGAATCATCCTGCTTCTGGTGCAGGCCATCTTGGGCTCCATCGTCAATGCCTTCATGGTGGGTTGCATGTTTGTGAAAATCTCACAGCCAAAGAAACGCGCCGAAACTCTCATGTTTTCCAACACAGCTGTGATATCCGTGCGGGACAGCAAACTGTGTTTGATGTTCCGTGTCGGTGACTTGCGAAACTCGCACATAGTGGAGGCCTCCATTAGGGCCAAGCTCATCCGCTCTAAACAGACCAAGGAAGGAGAGTTCATTCCCCTAAACCAGACGGACATTAATGTGGGCTTTGATACGGGGGACGATCGACTGTTTCTGGTGTCACCGCTGATCATTTGCCACGAGATCAACAAGAACAGCCCCTTCTGGGACATCTCTCAGGAGCAACTGTCACGAGAAGAGTTTGAAATAGTGGTCATCCTGGAAGGAATGGTAGAGGCCACAGGAATGACATGTCAAGCCCGCAGCTCGTACCTGAACTCAGAGGTGCTTTGGGGGGAACGCTTTACCCCTGTCCTCTCGTTGGAGGAGGGATTCTACGAGCGGCCTCTGCTGTTGGCTGACCATATGTCTAGATTGGCTGACAATTTCTAGTGAGATGTGCCAAAGTGTTAATGATGGGAAATAATTTTTGGATTTCTTTGAATAACAGATATGTATCACAATCACTAAAAGTTGGACATTAACACCCAGCAAACAGAACGCACAATGTAACTGTTGCTCATTTATTTTGTTAACACATTGTAAACACATTGTAGCTACTATTTTTGTCATTTTCCATATCTTATGTCTACCATTCATATTTCCGCTTGAGGAACACCCTCACTGTTATTTATAGTTCTTCTTTTTTTGTTTTGTTTTTTTACACCAGATTTA

Function

symbol description
kcnj6 Human ortholog(s) of this gene implicated in alcohol use disorder and heroin dependence. Orthologous to human KCNJ6 (potassium inwardly rectifying channel subfamily J member 6).
kcnj5 Predicted to enable inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in atrium and cardiac ventricle. Human ortholog(s) of this gene implicated in atrial fibrillation; long QT syndrome 13; and primary hyperaldosteronism. Orthologous to human KCNJ5 (potassium inwardly rectifying channel subfamily J member 5).
kcnj9 Predicted to enable inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human KCNJ9 (potassium inwardly rectifying channel subfamily J member 9).

GO:

id name namespace
GO:0009897 external side of plasma membrane cellular_component

KEGG:

id description
K04999 KCNJ5, KIR3.4; potassium inwardly-rectifying channel subfamily J member 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_03660816_03671233.mRNA True 1442 mRNA 0.47 4 3660816 3671515

Neighbor

gene id symbol gene type direction distance location
CI01000027_03610825_03621755 PPOX coding upstream 38924 3610743 ~ 3621892 (+)
CI01000027_03570192_03600805 CSPG5A coding upstream 60011 3570192 ~ 3600805 (+)
CI01000027_03524553_03546701 SMARCC1, SMARCC1A coding upstream 114115 3523607 ~ 3546701 (+)
CI01000027_03470743_03477848 TBX20 coding upstream 181175 3470620 ~ 3479641 (+)
CI01000027_03421902_03436988 NA coding upstream 223600 3421828 ~ 3437216 (+)
CI01000027_03675758_03678539 FBL coding downstream 4243 3675758 ~ 3678649 (+)
CI01000027_03680285_03687497 ALKBH8 coding downstream 8770 3680285 ~ 3687516 (+)
CI01000027_03718436_03732820 DYRK1A, DYRK1B, DYRK1A.2.S, DYRK1A.2 coding downstream 46921 3718436 ~ 3733770 (+)
CI01000027_03736903_03741917 NA coding downstream 65388 3736903 ~ 3742682 (+)
CI01000027_03744339_03748166 NA coding downstream 72824 3744339 ~ 3748166 (+)
G138985 NA non-coding upstream 35208 3625313 ~ 3625608 (+)
G138954 NA non-coding upstream 146143 3507522 ~ 3514673 (+)
G138959 NA non-coding upstream 157623 3447979 ~ 3503193 (+)
G139002 NA non-coding downstream 72494 3744009 ~ 3744238 (+)
G138958 NA non-coding downstream 115840 3787355 ~ 3787850 (+)
G139016 NA non-coding downstream 152531 3824046 ~ 3824435 (+)
G139027 NA non-coding downstream 166690 3838205 ~ 3840442 (+)
G139023 NA non-coding downstream 193498 3865013 ~ 3865517 (+)
G138953 NA other upstream 140751 3502072 ~ 3520065 (+)
G138915 NA other upstream 174169 3484387 ~ 3486647 (+)
G138515 NA other upstream 1983956 1664408 ~ 1676860 (+)
G138436 NA other upstream 2153000 1506961 ~ 1507816 (+)
G138290 NA other upstream 2661635 995970 ~ 999181 (+)
G140436 NA other downstream 1065883 4737398 ~ 4774262 (+)
G140440 NA other downstream 1108902 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 1377408 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 1397837 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 1400547 5071693 ~ 5073136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010963 zgc:162160 coding NC_007127.7 CM002900.2 42193163 ~ 42238120 (-)
bowfin (Amia calva) AMCG00015273 LOC108437392,LOC105891768,LOC107719116,LOC107737835,LOC108256255,LOC107666762 coding CM030132.1 CM030132.1 6515366 ~ 6525807 (-)