CI01000027_03736903_03741917


Basic Information

Item Value
gene id CI01000027_03736903_03741917
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3736903 ~ 3742682 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000027_03736903_03741917.mRNA
ATGTACATCGCCAAAGCTTACACTCATGGGAACGGGGGTCACCTAGAATATAGCAATGTCGTATCCACGGAGCAGAAAGTCCGTGCCATGCAACCCATGCCAGGCGGCGTCAGGCCGTGGACAGAAGACAGTGAGTTTATAAAGAATCCTACGGTTATGCGACCATATCACGTTTTCCCGATGTTCCAACATGTTCCAGTTCCTCTCGTTGAAATGGAGCTGTTTAGACCTGTCTCCGGGAGACGACACTTACCAAACCTTTTAACTAGCCTTCTAATTCCTCAAGTGAACCCCCAGTTCACCCAAGTGTCTCCCGTGCGTAATGCTCGTGGCGTAGAGGTTTGGTGTGGTTACAGTAAGATCTCGGTGCGCATGAATAAGAATCGACTGGGCTTCAGAGGTTCACCGTCTTCATTTCATCTGGGAAAATGTCCTGTCTCTCGCTCCGACAAGAACTTCTTATATTTCCATTACGACCTCAATGACTGCGATAGCTCTTTAACGATGATGAACGGCCAGATCATGTATTCTAACACGGTGCGCTACACACCAGAGCCTCAAGGGACAGTCATCCGGGCGGTGCCCCTTACGTTAAACATCCAGTGCCTATACAATAGATTTCATTATTCTTACAAAATAGGCTTCCTGCCTGTGGTGAGGGAGCGCATGTTTCACAAGATTTTTGAGCGCAGTGCCAAGTTTAGTATTTCTGTGTGTAATGAACACTGGGAAAGACTTGAGGAAAATGGGAGTTTTGTGCTTGGGGAGCCCATGTATTTTGAAGTCAGTGCTGCTCATACTTCTAAGGACGAAAGGATTTTTGTTGACTCCTGCTATGCAACAGCATCCAAAGACCCAAAGTCCACTCCACAACACCGTGTTATTAGTAATTATGGGTGTATGGAGGACAGCAGAAGACAAGGAAGTCTCTCTCGCTTTCTCCAAAGACAGTCAAAGATTATAAGGTTTTCAGTTGATGCCTTTTTACTCCCCCAAGTTACTGGCACGCACTTTTACCTGCATTGCACAATATCGGTTCACAATGCCACAAGTGCCACAGCAAAGTCCTGTACTTATAACAATGCAGAGAGAAGGTGGGACGAACTCTACAATGATGCATCCGTTTGTGCTTGTTGTGATTCGACATGTGAAATTGAAGTAACTTCTTATTTGCCTCGTATGACACAATCTATGATAACAAGTCTACCCTGGATTTTGGACAAGAACAAACAATCGTTAATAAAGACTAAGGAAGGATTGGCCGGTGTTCAGGAGGACACAGAGGAGGTGAAGGTCAAGAGCGCAGAAGGAATCGGTGAAGAGGAAGATGATGATGGTTACACTGTGGAGATTGTGACTGATACTGAAAAACAAATGGAAGCAAAAGAAGAAAATGAACAGATGCCCATCAAAGACTTAGATGAGGATGTAGAAGTAATTGTTGGGACAGAGGAAACAACTGCTACAGAGTTAAAGGAACAGGAGGATGATCGTTCTGGAAAAGTAATGTCTGTTAGGGAACAGATGGATATGGTTGTAGAGTTCAAGGAGGATGCTGGGAGACTCAAGAACACAAGTAGAACTGAACAGCCTAAAGTTCTGTTAATAGAAGAGCTTTTGGAAGATGTTAAAGATGACAAAGGGTCCAGAAAGAGTGAACAAAATGAACTGATTTACAAGACCAGAGAAGAACTGTCCAAAGATGAAATACAGCCTGAAGGTTTGGAGAAGAACATGCATGTACGAAGCACAGTACCCTCACACATGGTGATAGATGAAGAGATATTTTTAAATGCCAAACAAGAACCAATTGAGTGGAATAAAGATGAACAATAACTAACCCAGAGAGCGAGAAATGGGGGACTGATGTTTGAGATCGTTCCAGGGTCTCAAAGGTATGACGGTTTAATTTATTTATTCTGAATTTAGCTGCATTTTATAAGAGATCCTTTATATTTTTTAAGCATTTTTTTTTTCCTGTTTTAGGATCCTTGATGGACTTTTTTTGGAGTTGCATCTCTCAGCATACTTAAAGTCAGTGTTTGATCATGGATTCAACTGAATTCAGGAATGTGCAATGCATAATATAATGACATCCAGGTGTTATTCATGCAAATGGAATCCGTCAGTAATGACATCCACTGTATTGTCATCAGAATATTAAAACAATTTGGATTGATCATTAGTTTTCTTTCTCTGATCATACGTCCTGTGACCATTTTGATGCGTCTCATTAATTGAACAATTTATTCTTCATATTTTCAGGTCATATGTTATGCTAAAGATGCATAAAGAAATCTAAGCTGATTTTTATGACCATTAATATATATATAATGTTTTTATTTTACATAAAGCTTTAGTAATGTTTGTTGTATTGAATTTGAAGCTGATTTTATAATTAATAATTAGAACTCTGAAAAGCCAATTGAAAGTTAATAATTAACTCTGAACTCTATACAGCACAGTACAGTAATGAGATTTTTGCAAAATGCAAAAAAACAAACAAAACAAAAACCATGCCTAAATCATAAGCAACACTACTTTAATTATGGAATTAAGCTAAAGAGTTCTTAGGATGAATTATGCATAGGTATAATATAA

Function

NR:

description
zona pellucida glycoprotein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000027_03736903_03741917.mRNA True 2601 mRNA 0.40 8 3736903 3742682

Neighbor

gene id symbol gene type direction distance location
CI01000027_03718436_03732820 DYRK1A, DYRK1B, DYRK1A.2.S, DYRK1A.2 coding upstream 3133 3718436 ~ 3733770 (+)
CI01000027_03680285_03687497 ALKBH8 coding upstream 49387 3680285 ~ 3687516 (+)
CI01000027_03675758_03678539 FBL coding upstream 58254 3675758 ~ 3678649 (+)
CI01000027_03660816_03671233 KCNJ9, KCNJ6, KCNJ5 coding upstream 65388 3660816 ~ 3671515 (+)
CI01000027_03610825_03621755 PPOX coding upstream 115011 3610743 ~ 3621892 (+)
CI01000027_03744339_03748166 NA coding downstream 1657 3744339 ~ 3748166 (+)
CI01000027_03771203_03774232 ETV2 coding downstream 26713 3769395 ~ 3774519 (+)
CI01000027_03776983_03781753 NA coding downstream 33456 3776138 ~ 3781891 (+)
CI01000027_03783310_03784541 NA coding downstream 40240 3782922 ~ 3784541 (+)
CI01000027_03798333_03830899 GRAMD1A coding downstream 55262 3797944 ~ 3831143 (+)
G138985 NA non-coding upstream 111295 3625313 ~ 3625608 (+)
CI01000027_03570192_03600805 CSPG5A non-coding upstream 137092 3570192 ~ 3600805 (+)
G138954 NA non-coding upstream 222230 3507522 ~ 3514673 (+)
G138918 NA non-coding upstream 238984 3492432 ~ 3497919 (+)
G138915 NA non-coding upstream 250256 3484387 ~ 3486647 (+)
G139002 NA non-coding downstream 1327 3744009 ~ 3744238 (+)
G138958 NA non-coding downstream 44673 3787355 ~ 3787850 (+)
G139016 NA non-coding downstream 81364 3824046 ~ 3824435 (+)
G139027 NA non-coding downstream 95523 3838205 ~ 3840442 (+)
G139023 NA non-coding downstream 122331 3865013 ~ 3865517 (+)
G138953 NA other upstream 216838 3502072 ~ 3520065 (+)
G138515 NA other upstream 2060043 1664408 ~ 1676860 (+)
G138436 NA other upstream 2229087 1506961 ~ 1507816 (+)
G138290 NA other upstream 2737722 995970 ~ 999181 (+)
G140436 NA other downstream 994716 4737398 ~ 4774262 (+)
G140440 NA other downstream 1037735 4780417 ~ 4785660 (+)
CI01000027_05050310_05055447 NA other downstream 1306241 5050310 ~ 5055755 (+)
CI01000027_05069310_05070638 NA other downstream 1326670 5067917 ~ 5070868 (+)
CI01000027_05071693_05072917 NA other downstream 1329380 5071693 ~ 5073136 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_010959 zp3d.1 coding NC_007127.7 CM002900.2 42057918 ~ 42066617 (-)