Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000027_03863467_03864594 |
| gene name | PSMC4 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000027 |
| NCBI id | null |
| chromosome length | 10680226 |
| location | 3862496 ~ 3864877 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| psmc4 | Predicted to enable ATP binding activity; hydrolase activity; and proteasome-activating activity. Predicted to be involved in positive regulation of RNA polymerase II transcription preinitiation complex assembly. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of cytosolic proteasome complex and proteasome regulatory particle, base subcomplex. Predicted to be active in synapse. Orthologous to human PSMC4 (proteasome 26S subunit, ATPase 4). |
| id | description |
|---|---|
| K03063 | PSMC4, RPT3; 26S proteasome regulatory subunit T3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000027_03863467_03864594.mRNA | True | 1476 | mRNA | 0.43 | 3 | 3862496 | 3864877 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000027_03851507_03856447 | PSMC4.L, PRS6B, PSMC4 | coding | upstream | 5979 | 3851507 ~ 3856517 (+) |
| CI01000027_03845911_03849635 | NA | coding | upstream | 12826 | 3845911 ~ 3849670 (+) |
| CI01000027_03798333_03830899 | GRAMD1A | coding | upstream | 31353 | 3797944 ~ 3831143 (+) |
| CI01000027_03783310_03784541 | NA | coding | upstream | 77955 | 3782922 ~ 3784541 (+) |
| CI01000027_03776983_03781753 | NA | coding | upstream | 80605 | 3776138 ~ 3781891 (+) |
| CI01000027_03879680_03890591 | NA | coding | downstream | 14397 | 3879274 ~ 3891737 (+) |
| CI01000027_03907257_03920389 | CEP85 | coding | downstream | 42380 | 3907257 ~ 3920988 (+) |
| CI01000027_03941809_03967258 | ATP2C1 | coding | downstream | 76932 | 3941809 ~ 3967258 (+) |
| CI01000027_03976548_03994948 | NA | coding | downstream | 110556 | 3975433 ~ 3995028 (+) |
| CI01000027_03998691_04000730 | RPP25L | coding | downstream | 133291 | 3998168 ~ 4000834 (+) |
| G139027 | NA | non-coding | upstream | 22054 | 3838205 ~ 3840442 (+) |
| G139016 | NA | non-coding | upstream | 38061 | 3824046 ~ 3824435 (+) |
| G138958 | NA | non-coding | upstream | 74646 | 3787355 ~ 3787850 (+) |
| G139002 | NA | non-coding | upstream | 118258 | 3744009 ~ 3744238 (+) |
| G138985 | NA | non-coding | upstream | 236888 | 3625313 ~ 3625608 (+) |
| G139023 | NA | non-coding | downstream | 136 | 3865013 ~ 3865517 (+) |
| G140381 | NA | non-coding | downstream | 267961 | 4132838 ~ 4133069 (+) |
| G140384 | NA | non-coding | downstream | 275062 | 4139939 ~ 4140428 (+) |
| G140386 | NA | non-coding | downstream | 281611 | 4146488 ~ 4146794 (+) |
| G140391 | NA | non-coding | downstream | 303532 | 4168409 ~ 4168635 (+) |
| G138953 | NA | other | upstream | 342431 | 3502072 ~ 3520065 (+) |
| G138915 | NA | other | upstream | 375849 | 3484387 ~ 3486647 (+) |
| G138515 | NA | other | upstream | 2185636 | 1664408 ~ 1676860 (+) |
| G138436 | NA | other | upstream | 2354680 | 1506961 ~ 1507816 (+) |
| G138290 | NA | other | upstream | 2863315 | 995970 ~ 999181 (+) |
| G140436 | NA | other | downstream | 872521 | 4737398 ~ 4774262 (+) |
| G140440 | NA | other | downstream | 915540 | 4780417 ~ 4785660 (+) |
| CI01000027_05050310_05055447 | NA | other | downstream | 1184046 | 5050310 ~ 5055755 (+) |
| CI01000027_05069310_05070638 | NA | other | downstream | 1204475 | 5067917 ~ 5070868 (+) |
| CI01000027_05071693_05072917 | NA | other | downstream | 1207185 | 5071693 ~ 5073136 (+) |
