G307536


Basic Information

Item Value
gene id G307536
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000093
NCBI id null
chromosome length 1475560
location 990661 ~ 1063421 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU349448
NNNNATTATTAAGTAGCCTAAACTTCTTTTTGTTAATTGTGATTTATTACTTAAATTGTCCAGGTATATTCACCCTGGCTCTTTCTAAAGATGTAGGCCCTTTGTAGCTTGCTTTGGCTTATATGTGGCTAATGCGTGGCCAAAATTGAATTGTGGGGCCACATTTTGTAATGTCAAAATGCTTAAAAATGAAGTTAATGAAGTTTTTAATCAAACAGGATGTAATAAATACAAATATGTGTCCTGTCTCTGTTAACATTATATCTACATTTAACTCAAGGTGGCAGTAGAGATCCATAAGATGATCACTTTGGCCTTTTACTGTGAACTTTAATATCTATCAACCACTATTTTCATGATTAAAAACAAAGTTGTTTTTCAAATATAAAAAAAAAAGATTAATTATAAATAAAATAATAAATATAATATTTAATATTACATAAATTAGTGTAGAAATAAATATTGTTGTTATATAAGAATAAGCATTCAGGAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU349448 True 494 lncRNA 0.27 2 990661 1063421

Neighbor

gene id symbol gene type direction distance location
CI01000093_00906831_00917953 AKAP1B coding downstream 71931 906486 ~ 918730 (-)
CI01000093_00885214_00889462 NA coding downstream 101087 884976 ~ 889574 (-)
CI01000093_00841300_00846650 NA coding downstream 143534 836236 ~ 850001 (-)
CI01000093_00777884_00821939 NA coding downstream 168457 774733 ~ 823058 (-)
CI01000093_00766249_00769928 NA coding downstream 219207 765487 ~ 771454 (-)
CI01000093_01082814_01125194 NA coding upstream 18117 1081538 ~ 1125536 (-)
CI01000093_01136960_01147480 NA coding upstream 73539 1136960 ~ 1147480 (-)
CI01000093_01155146_01166220 CUEDC1B coding upstream 91357 1154778 ~ 1166220 (-)
CI01000093_01189004_01193556 NA coding upstream 125126 1188547 ~ 1193673 (-)
CI01000093_01208954_01210829 RAB1A, BRAFLDRAFT_276199 coding upstream 145516 1208937 ~ 1210829 (-)
G307738 NA non-coding downstream 92294 897958 ~ 898367 (-)
G307550 NA non-coding downstream 136809 780328 ~ 853852 (-)
G307554 NA non-coding downstream 155999 823658 ~ 834662 (-)
G307555 NA non-coding downstream 226964 747449 ~ 763697 (-)
G307753 NA non-coding upstream 5545 1068966 ~ 1070452 (-)
G307757 NA non-coding upstream 65457 1128878 ~ 1129105 (-)
G307587 NA non-coding upstream 121489 1184910 ~ 1192058 (-)
G307563 NA non-coding upstream 140954 1204375 ~ 1204759 (-)
CI01000093_01231795_01232733 OR118-1 non-coding upstream 170662 1231291 ~ 1234697 (-)
CI01000093_01042275_01068202 NA other upstream 4598 1041650 ~ 1068202 (-)

Expression


Co-expression Network