CI01000093_00777884_00821939


Basic Information

Item Value
gene id CI01000093_00777884_00821939
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000093
NCBI id null
chromosome length 1475560
location 774733 ~ 823058 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000093_00777884_00821939.mRNA
ATCATGTTGATATTGGTCCCTAATAGTTGAAGTATTAAATTTCTGCCTTATTAGCAGCATTGCAATTAAATTGAGTTGCAAAAATCACTTTTCAAACAAGTTGTGCAAACACTTTATCTCAAGTACTTGAGGTTTGTTACAGTGATGCAAGAATGTTAAATTGTCCAAGCGTTCACGTTTGCATGGAGTTTATAGCTTTAGTTGTAACCGACTATTTACCAAAACCCACATTGCCTTGATGGAGCATTGAAGGGTGTATTTTAGGATGGAGGCAAAACACACTCATTTAGTTAGTCAGCAAGGCACGTGTTTTGTCAGCAAAAGTCTGTATGTAAAACGTGAAGCACAGACTGTGTTTGTGTACAAGAGCTCATTTACTCATGGCGTCACTTCAGCAGGGGTCACAGAGGCAGAGCCTGACGAAGACGAGGGGCTCTGGAGTGTCGCTGTGTGCGAGCGGGGCTGGCTGAGAGTAATGGAGTGTTTCAGAGAGTCGTGCAGATTGTGTGAGAAGCTTTCTGCTGAAAATAACCACCCGGGTCGAACATATGTGGAGGCTTTTTTGGTTAGCTTGAGTGAAAATGCTTCTCTGATGGCTTTAGTCCTTGAACACCACAGAGAAGGACATAAAAGTCTGATATCGTTTTATACTCCTAAATGGCAGCTTGGGAGAAAATGTCTGGGGAAAAAAGCCCGATCTATTGTGAAAACTGAAAGGAAAGGAAAACGTACAGTCGCTTTAAAAATGTATACAGCTTCCAGCGTAATAGTACTGTTTATCAAGGCTGAAAGCTCATTGATATTCAGCGGGTCAGCAAAAGGCCGCTTGGCTCAGTCTTTGGCAGCCAACCTGCTGTCAGTGTGGAGACTGCTTGCTGTAAGCTTGAAGGAGCCCCGCTTTGGGCTGTCACCTGCCATTTGCACTGAGAGCGAGAGACTCTTCTTCTATAAGAAAAACATCTTCCTTTTTACTGTGGATTGTCAAATCCACATCTTCCAACCACCAACTCGGTTGAGATGTTGGGATCACCTGCTGCGTCACAGCTCTGACAATAAGCACACATTTAATAGAAATCCACACGGGTCTAACGTGGGCTATTTGATCTCAGTGCACCAGCTCTCAGCACAATTAACGTTGCTGCATGAAGAGAAGTCGGGTCTCTGCGCTCCATATATCTCTCCAGCAGGGAGAGTTAATTGTGTTTTGAAAAATGGGCCTTGTTTCATGATTTCGACCTCTACTACTGTCTGTTCTCACTGGTTTGAGATCCCGCCTGGCTCAAAGACTTCTAACTTTCCGACACCTTTTGTTTGTAACTCAATTAGAGTGTTTTTGAAGGTCTATTCGAGCTGCTCGCTCTACTGTCCTCTGAAACTTTCCTGTTCCAATTTTCTTAAATGGACTGGGGGAATGCGCGTTGGGTCTTCGCAACTCAAGAAAAACACCATTCACAGCTCAGGTGTTTCTGTTAGTGTGAAACCAAAAAGTGTCAAGTCTGAAATGCTGAGAGAGAAAGAACAGATGGTCACAAGAACAAAGAAAATATTTGTAGGCGGATTATCAGCTAACACAGTAGTTGAAGATGTGAAGCAGTATTTTGAACAGTTTGGCAAGACAAGAAAATTACAAATTGACCGTCCGTTGGATACGCACTTCTTGATGCAAAGCTTTAATGAAGCCTCAAAGGTATTGGGCATCATATATGATTACCGGGCTTACACCGCGAAGAATGGCTGTATAACATACGCTAGAGTCCTCCCGACAGTCTTTATCAGCGCCGTGGGGGGATGTGGCGGTTCGAAATGTCGCAGGGACTCTTTTGAAAAGACAGCTTGTCAGTTTCATCCCGACGTCGATGAGGAGTCGACCGGCCTGCTGCAGGTGGTTGTCATCCATCCTTCCAAACAGCTGGTGGGAGGGTGGGCCGGGGGCTGGCGAGGAAGGGGTCTGGGCCCGGTGCCCCCATCACCCGCCTTAATGACAACACGCTGCTTCCCCAGCGTCCAAACAGCAGCCACACGCGCAGATGTTCAATCTGCGTTTCTGACGAAATGCTGTCGAGACCGCTCACAGACTCCAGAGCGTTTTCAAATTGTCCTGAAGTGGTCCAAACAGGCTGACCGCACCACCCTGGGTGTCAAAGCGAGCTCTTTTAAGTCTTTCGCAATCTCCTGCACCCTGGTGGTTCGAAGTCTTGCGCTTAGGGCGGAGGTGTCATCTCTGCTAATTATTTTGTATCAGGAAAATGTTTTCATGGTCCTGAAGGTCTCTGAGGTAAGCGTTTCTCTGGAGCCGATGAATGAAGTAGTTGATATAATTAGCAGCAGTATTGTAAGGGAGAGGAGGACAGGACGGAATGACCTTGAATGCTGGGGGGGTCACACGTCTGGCTTTGTTAGCACCCTCCTTCAACAGACCTGTCCCCTTAACTTCATCGCCATAGTAACCTCAGCCCTCGGCGGCGAGGCTGACCTTCATGCTCTAAACAACAGTGGCGAGTCAAATTTGGCGTCTCTTCGGATAGGGGACGGTGCATTACCGGGTCTGGAGCCGGAGCGCGGGGGACGGTTGGCGTTTCACCTTGCTCAGCCCCCTGCGCCCGTGTCCTCTTAAAGCCAGAGGAGAGCATCAGCTATTTACTGTTGCTGGCTCGCAGCACTGCCGCCCAAAAATAGAGGCACAGTAATCACAATTACACAGCCGGGGTGGAGGGCTGAAGTGTCATTTAGAAAAATAATCAAAAAGTCATCTCTTGCTCTCTCTCTGCACCCTCCTCTCTCTTTGTTTCTCGCTCGCTCTCTCACTTTTCGAATCTGGCACAGTTTCAAGTAGCCTTGTTCAGAGCCATTACTGGAACAGACTAAAGAGCAAAGAAAAGGTTGATGAACGACAGGGAAAATGGACAGATCGTATAGGGTGAGAAAGAGTCGATTGGCCTCTTAAAAGCAAAGACCGTGGAGGGCAAGGCCAAAAACACTGGGTGGGCATTGAATGTCGCTCTCGAACCAGGAGAGTTCTCTTCACGTCGCTAAGAGATCTTATAGTCCTACTGGGATTTAAAGCTTAAGCAGGCAATAGGGGTTCGGACAAATGTCTTGATTAAAGCATTAAGTGTCGTTTAATGATTCCGAACACCCCGCATTTGTGTTAATGCATTGCTGTTAGAGTCAATAAGAAAGTAAGTACGTTTATATACCCACCATTAGCACCTTTTGATTTACCGATCGCATTAAGTCTTGCGGTCATAAAACGAGTTAACTTATTTAAAATACGCAAAGCTCTGTATTTCGACTGTATTCCTTATTTATTCCCGTCTCGCAGAGCTTTCTTTGACCTTTAAGATGCCATCGCGGCAATCTGCATTTTGGCCATTTCACAAACATTAAGCCAACAAACAATACCATAATTGTGTTTAAAGCTGAAAAGATTCCACAGCCACCAAATGTAATCACACTGATGGTCTGATAGACTGAAGCAATTTAATTTCTATTGAGGGTCACAGCAATTTACTGAGTGCTAATTCACTTTAAAAATGCTAATAGAAATGTATTGAATCATCTACTGTGCATTTACAGAGCGCTGGGAAATAGAAGCTAAACAGGTTTATTTAAGAGGCTTGTGATAGGGACATTGAGAGAATGTGTGCGTTTGTGTGTACATGAGTATGTTGGTTGGGTGAATCACTTTTCATACCAAAAATAAA
>TU349502
TGTGGCGGAAGAGTGAACTCTGACCCGACGCATGGTGCAATGACGAACGCAGTAGCACATAGGATAGAGCAAAACAAAACAAAACACCGAAAGTCGAAAATTAGGAATTTTAAAGAGAAATGTCGGAGGATTTCGATATAAGAGAAGAGGAACTTGAGTTTGTTGCCCAGACATATTTGTTTAAACTGAAAGGCGTCTAAGCTTACGATACTCCTACATCCTGCGTCATACATCGCGTCAGGGGGTTACTCATTTGGCGCAAGTCGACTTGCGCAGTATGTGTATGGTCGTCCGCCGGAAGCTAGTTATTTTAAATAAAGTTTTAAATATGGATATTTTTCTTACAAAAACCCATTGCTTCGCTCCAGATTGCCTGTATTAACCCCCTGGAGCTGTATGGATTATATTTATGGTGAATGGATGCATTAATTTTTGGCCCCCCATTCACTAACGTTATAATGCTTGAAAGAGCAAAGACATTTTTAAATTTATCTCCGATCTGAAAGAAGATCGTCATATACACCTAGGATGGCTTGAGGATGAATAAATCACGTGATCATTTTCATTTTGGGGTGAACTATCACTTTAAATGATTGTGGGGGGAGAAAAAAAAGATTGTTATAAAAAGAAAGATTGTTAATATAATTAAATTTAAATAAAAAAAAAAAAATCCATTGAAAATTTGATGACATTTGAAAAACAGAACTGGATCTTTTTTGTAAACAGTCTCACAGAATGTAGATATTGGCAACTACATAATTTAATGAGTTCAAAATATAAATAATTTTGTATAATATAATAATAATAATAATAATGCCTATATAATATTTTATACCATATATTGAGTATTTGCCATCATGTTGATATTGGTCCCTAATAGTTGAAGTATTAAATTTCTGCCTTATTAGCAGCATTGCAATTAAATTGAGTTGCAAAAATCACTTTTCAAACAAGTTGTGCAAACACTTTATCTCAAGTACTTGAGGTTTGTTACAGTGATGCAAGAATGTTAAATTGTCCAAGCGTTCACGTTTGCATGGAGTTTATAGCTTTAGTTGTAACCGACTATTTACCAAAACCCACATTGCCTTGATGGAGCATTGAAGGGTGTATTTTAGGATGGAGGCAAAACACACTCATTTAGTTAGTCAGCAAGGCACGTGTTTTGTCAGCAAAAGTCTGTATGTAAAACGTGAAGCACAGACTGTGTTTGTGTACAAGAGCTCATTTACTCATGGCGTCACTTCAGCAGGTGAGGACGGCGGGAGGGAGAAAAAGAGGGGGTGGGTTCCCTCTCATGTCACAGCCCAACAGAGTGGCTCTATCTGGGCCAGGGGTCACAGAGGCAGAGCCTGACGAAGACGAGGGGCTCTGGAGTGTCGCTGTGTGCGAGCGGGGCTGGCTGAGAGTAATGGAGTGTTTCAGAGAGGTGAGGACTCGCCTCTGAAAAGCAGCACCGCACTCAGAGAGGCGTTTTTTTAACCGAGAAAAACACTCCCACCACAGCCAGCCCCTGCAGCAGTGCAGAGGCAGGTCACACATGGATGAACAGGGCTTTCTCTCTCTCTCAGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGAACATGTGCTTTAGGCTCTGCAGCAGTCCTGCTAGCGTATTTCAGCCCACCCTAGAATTTCTCTTAAAACCCATTCAACCTTTGTCGCATTACTGGAGTTGAAACCGACTTTTTAGTGCTTTACTGTTGATAAGCGAAAACGTGGACATGTTCAGTACAAAGATTTGTTAAAAGCTGTAAATAGCTGTTCTGTATTAATATCTATATTAGCTTTACTTGCACTAGTCAGCACTTGTTTTGTATCTGTTCAGGAAGCACTTCTTTTCCTAACGCTTAACAGTCTAAATTACGTTCCTGCCATCTGTTGATCACAACGGTCTTGTATGTGAAACTCAAGCACATTTTTGTAAGTCGCCCTGGATAAGAGCGTCTGCTAAATACGTTTGATGTAAACGTAATTATGTGTACAACTCAAGGTTATTGCTGTTATTGAGCCCATGGCTTTGTTTTAAGTCGTGCAGATTGTGTGAGAAGCTTTCTGCTGAAAATAACCACCCGGGTCGAACATATGTGGAGGCTTTTTTGGTTAGCTTGAGTGAAAATGCTTCTCTGATGGCTTTAGTCCTTGAACACCACAGGTGGGATTAAACTAATCACTCAGAGAGGGCGACCATTGATCAGGGTTACTTAAGCCCTTTGGAAAAACATGGCTGTCCAGACACAAAGTGTCACTGAGATTTTTTTTTTCCCCCACAGTGACGGAAGCCGCTGCTGTGGACGGAAATGTTATGTATAGTCACATGAACGTGGCAGTGTTGATTAGGTGGTGATGGTTAGGTACCAAAGTAGTCGGTACCAATACCAATAAATAAACTGTTACATTAAGTACTTCAAAAAAATGTTGTCTCATTTTGTCTCATCCATTGGTTATCACTGTCAATCATTGCAGTTTCCGATTTAATCACACATTTAAATATGATTGTCAATCCAGAAACTTTGCAGTGTACTTAGCAGCGTGAAAAACTAAACTTGTATTCAGATTGTGATTGGGTAATAAAGCAAGAGAAGAGCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000093_00777884_00821939.mRNA False 3704 mRNA 0.45 18 776794 822204
TU349502 True 2615 lncRNA 0.40 2 820408 823058

Neighbor

gene id symbol gene type direction distance location
CI01000093_00766249_00769928 NA coding downstream 5340 765487 ~ 771454 (-)
CI01000093_00716586_00720543 NA coding downstream 55928 716569 ~ 720866 (-)
CI01000093_00693070_00700737 NA coding downstream 73189 686323 ~ 706880 (-)
CI01000093_00643216_00644177 NA coding downstream 132617 642975 ~ 644177 (-)
CI01000093_00633602_00642455 NA coding downstream 134272 631626 ~ 642522 (-)
CI01000093_00841300_00846650 NA coding upstream 18709 836236 ~ 850001 (-)
CI01000093_00885214_00889462 NA coding upstream 62772 884976 ~ 889574 (-)
CI01000093_00906831_00917953 AKAP1B coding upstream 84282 906486 ~ 918730 (-)
CI01000093_00929066_00991259 NF1A, NF1 coding upstream 106862 929066 ~ 991259 (-)
CI01000093_01024056_01030224 NA coding upstream 200792 1022996 ~ 1030338 (-)
G307555 NA non-coding downstream 13097 747449 ~ 763697 (-)
G307540 NA non-coding downstream 248398 525733 ~ 528396 (-)
G307543 NA non-coding downstream 251117 518917 ~ 525677 (-)
G307718 NA non-coding downstream 261362 515070 ~ 515432 (-)
G307554 NA non-coding upstream 1454 823658 ~ 834662 (-)
G307738 NA non-coding upstream 75754 897958 ~ 898367 (-)
G307536 NA non-coding upstream 168457 990661 ~ 1063421 (-)
G307753 NA non-coding upstream 246762 1068966 ~ 1070452 (-)
G307757 NA non-coding upstream 306674 1128878 ~ 1129105 (-)
CI01000093_01042275_01068202 NA other upstream 245815 1041650 ~ 1068202 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G59441 NA non-coding NC_053117.1 CM020914.1 5642616 ~ 5642842 (-)
bowfin (Amia calva) G63836 NA non-coding CM030127.1 CM030127.1 23202970 ~ 23205921 (-)