G63836


Basic Information

Item Value
gene id G63836
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 23202970 ~ 23205921 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU79875
caGCTCATcctaatggttttatttattaaagcagtATCCAATGATCAACAGTTGTTTGCAGTCACAAGTCATGCAGTCTATATTGGCATACCCTGTAAATCAGACTCAGAAAAAGTATAACCTAAGTAATAAAGCAAGATACAAAACATAGGCTGAATATAATTACAGAGATGTATTTAATAAGGATTAAAGTTAACCCaaccatttatttgaaaaatgggTTTGCAAAAAGCTTTCCCACAATAGTTTGCATTGGCCTACACTTTGACATAATCAATGAATTACAGACTACCAAAATAGCTTCACATGAATCGCATAAATTAAACACGATTCCTTTCTTCTTAAACACtcctgtaattttaataaatctgttttaatactgaaacaaaaatggtttggcaatttttttttccacatctgtCTCGATTTACTGTTGCCCCAGATTCAGATTTGAGTAATCATAGaataaatattacagtattaGAATTGCTCAAAGCATTAGTTTCACAGAGGACCTGCTCCCAGAAATGTGTGTACTTCGCTTTATTGGCCAAGTAGGTCTAGCAACCAATACTTCCAGTTGATTGCTAAGGACATACACAAACATGCGATATTCAACTGTagttcaaaaatatattatctataATGGGATATGCTGAACAATACTTCTGATCatattacttaaaataacctATTCAagttatgcatttatattatttgtcatttagcagacgctcttatccagggcgacttacatttgtacccatttatacagctgggcattttactggagcaatctaagtgaagtaccttgctcaagggtacaacagcactgtcccacccgggatttgaacccacaaccttccagttatgagtccagagccctaccCACTACTAAACAgtgatgtaatgtaatttatgcaTTTACCTTAATCTTTCTTTTCCAGCATACAATTAGTGTAAGTACAGTTACTTCAGAAGATCTGCATGTAAACATTGCTAATTTGGTTTTAAGAGACTAGTCAAAAAttggaaaattaaatatgatcaaCAATGTACttgtacagttttatttatggttGTGCTTGCTTACCTCaagggggaaaaaggaaaatattgagGGAGGGGAAGGTTAtgaccacaaaaaataaaataaaacttaaacaaaatgattggGCAAGATTCACTGGACATCATAGAccattaagattatttttttcacttgataAATTTAATACAATCAATGAAAAAGCAAGCTCtcaaacacaagcaaacaataTATGAATTATTTCTTTATGTGCGCTTTTATCACATCATGGATTTTGTCAAACTGTTTTCGGAGTTACACAAGTCCTGTTTTGGGGGAACCCCACTGCTGCAAGGAGGCTCCCACAATCCCATAATTTCCAGTGAAGTGAAGCCTGGTGACAGCTTCTTCCTGAACATCACATATCAAGCAACCTGGTGCTGCGGGTCCTTAATCTTGCAGAATCCCATCAATAATAACTCCACTATCAAGATGCCAACTGTATACCTCCATGGCGGAGGAAAGGAAAGCTAGAGTGAAACAAATTCAACCCATTTCATGAACTTTGTCAGTGGATGGGCAATAGTTTTAGATATCTATGTATTTCACTGACATTTAGGGGTAaaaatttaattattctttgaATTAAGggaagaaaattgaaaaaaaaagtaaacaaaaggCAGACATTGTAATGGAATATTTCAATCTTCATTGGTATTTCTCCAGCTTGTGTACACAGAAAGCAATAATCAGGAATCCCCAGGGAGTAGGATAAAGTGACCATCAcccagctttcttttttttaatttttaaacattaactgCAAAATGGTGAATCTGCACgtccacatttatttatttacgtgcACATAAGCCTTTAAATCCTAAAGCGCATTTTAAAAacttatttagatttttatactAATTCTACACCCAGAATCCACACAGAGGttctcaaacatttttttttttttcagcacacAGTAACATCTCTCCTCTCATATCAATGGCTCAAGTGTTATCTAGATTAAAAAGCATAAGGGAGGTTGGGTGAGGAAGGGACTGGGGAAAAGTGGTTGTGAGGAAAAGACGCAACTCGCCTCTGGAGTCGGGAAACAAAGCGCTGAAATATTCATACATTAAGATCTACACAATTTTGTTGCTGGTGCAGGGATCTTTTGCACTAGGCAGACTGAACAGGTGGAAACTGCAAATTGATTAGAATGTCAACTCCCCTTGCTAAAAGGCAAAACTGATTTTACTTCTCCGcccttttgtttaaaaataaaaataaaaatccaccaGTCCTACAGCATTAGCCTCTACTGGTAAAATTGACTTTTATTAATACAGTGTCCCCAGAATCTACCAGGCTGGAGATAAAGATTCTTGTCCTTGTTGTCGATCAATCCCTTATCCAACCGTCTCTTTCTTTCcagcatttaaaagcaaatgctgCGCAGACAAAATTAAGCCATCTGAAGTAAgtatttgcaatttttttttcttttttttctattttatttttttattttttcaaaaaagataaaaggatAAAGGAGTTGTTGGAAAAGCTGACTCTCTGGAAAAGcagtggggtgggggaggaaaATCTTGCAAGAGAAGTCGGGCAGTGTTCTTGGAAAGAATGTTGTCTGATTTCTACAGCAGGTCAACGCGACGGTAGTACAGGAGATAGGCTGTGCGTTCTGCCGACTGCTTCACCACCTGGTACTGGTTGATCACCTTCACTGCCTGGTCATCAATGCGCAGCCAGCCATTAAGACCGATGTGGAAGACGTCCGTGGTGTAATGGCCGCCAGTAGCGCTGTTCCCATGGTGATAGAcaactgtgaagagaaaaaaTGAGTGCTTTAGTATCCGATATCCCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79875 True 2923 lncRNA 0.37 2 23202970 23205921

Neighbor

gene id symbol gene type direction distance location
AMCG00020511 NA coding downstream 34203 23164437 ~ 23168767 (-)
AMCG00020509 znf821,LOC107561503 coding downstream 116159 23070850 ~ 23086811 (-)
AMCG00020510 NA coding downstream 165156 23033583 ~ 23037814 (-)
AMCG00020501 LOC107663029,LOC107561452,LOC107730149,LOC107600367,LOC107733239 coding downstream 224346 22975667 ~ 22978624 (-)
AMCG00020503 NA coding downstream 258356 22938797 ~ 22944614 (-)
AMCG00020516 NA coding upstream 60086 23266007 ~ 23276284 (-)
AMCG00020521 LOC106562086,LOC106587179 coding upstream 666493 23872414 ~ 23899771 (-)
AMCG00020523 NA coding upstream 713790 23919711 ~ 23923789 (-)
AMCG00020524 LOC107565376,LOC106562089,LOC106587181,LOC107738346 coding upstream 775439 23981360 ~ 23982883 (-)
AMCG00020525 cpne7,LOC107090182,LOC102798764 coding upstream 788467 23994388 ~ 24015767 (-)
G63834 NA non-coding downstream 8441 23194144 ~ 23194529 (-)
G63829 NA non-coding downstream 20863 23171808 ~ 23182107 (-)
G63800 NA non-coding downstream 132150 23070401 ~ 23070820 (-)
G63791 NA non-coding downstream 132668 23068319 ~ 23070302 (-)
G63799 NA non-coding downstream 134770 23062058 ~ 23068200 (-)
G63858 NA non-coding upstream 72871 23278792 ~ 23279073 (-)
G63921 NA non-coding upstream 706941 23912862 ~ 23913221 (-)
G64012 NA non-coding upstream 1026795 24232716 ~ 24233398 (-)
G64013 NA non-coding upstream 1027721 24233642 ~ 24235127 (-)
G64028 NA non-coding upstream 1098563 24304484 ~ 24304935 (-)
G63819 NA other downstream 41070 23154692 ~ 23161900 (-)
G63679 NA other downstream 658281 22543842 ~ 22544689 (-)
AMCG00020489 rnf166,LOC106587267,LOC106562062,LOC107685853 other downstream 736203 22440792 ~ 22466767 (-)
AMCG00020471 NA other downstream 1070233 22130842 ~ 22132737 (-)
G63464 NA other downstream 1890365 21312202 ~ 21312605 (-)
AMCG00020561 NA other upstream 1442082 24648003 ~ 24677810 (-)
AMCG00020559 NA other upstream 1485972 24691893 ~ 24698947 (-)
AMCG00020560 NA other upstream 1547961 24753882 ~ 24776409 (-)
AMCG00020581 NA other upstream 1905189 25111110 ~ 25119596 (-)
G64247 NA other upstream 1915177 25121098 ~ 25139385 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000093_00777884_00821939 NA misc CI01000093 null 774733 ~ 823058 (-)