XLOC_010978 (si:dkey-7j14.5)


Basic Information

Item Value
gene id XLOC_010978
gene name si:dkey-7j14.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 43014417 ~ 43026273 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021455
GTTTCTCCAAGCGCGCGCGCTTGACTCAGCTCTCTTTCCCTCTTCATAATTAATAACCGGGTTAAAAATACCCGGCGCGTGCAGTGCTGGTTCTGTAGAAAGAGAGCGGCTGGTTTGAGTTGAGTTGTGTTCGGGACGGAGCCAACCTGGATTTCTCCTTGTTTAGTCGCCTCCTCCTCCCTTCATGACATCAACACTGCGGAGGGAGCCGCCGCGGCGCGCGCTCTGCTGCAGAACAACGCCAGTGCGCAAAGCGGATCGTGCGGTATTGATGAGCGATTGGTGATCTGTCAGGATGTCGCTGTACGCTTCTCAGATTAAAGCGTTTAAAGGCTCCGAGCCCAAAACACTTGGTGCTATTGAGATCATCATTGGTGTTTTGACTGTCATTTTGAGCACAATCGTGTACAAGCTGCACTATCATATCCAGCGGGAGATCATCATCCTCATTGTGAATGGCGCTCagCTCCTCATTACTGGTATTCTCCTGGTGCACACTGGGAGGAAGCCGTCCAAATGTCTGGTGCTGACGACCATTGTTCTGCAGTTACTAACAGCAGCATTTGATATTGTTGGATTTGGGCTCATGGCCAGACACATCCCATTCAGAGGAGAGTCATACTACTACAGGGACACCGAGTGGTGTTGTGACCCACTTCACTCTGTTTGGGCTTGCTGTGGAGAAGGAGAGAAAGGGGGACACAAAGAGTTCTTAGTGAACGGGATCTTGGGGACGCTGATCGGTTGCCTGGTGTTAGCATGTATCATTGGTTTGGTTGTGTCTCTGTTTGGGGTCTACGCTCTTTCTGTTAGTGCCATTAAGGAGCTGACCCCCATCCCTCACTCCACAGCAAACCAACATTACGGTGTTATTGTTCAGTCCCAGAACGCAATCCATGCTGGGAACTGACACACTGAGAGACGTTCAGAGCAGAAGGGTGCAGTTTTAGCACACTTTTACACCAACTGCAAAAGAGGACTGTTTCACCTAAAAACCACTCACAGGTAAACAACCaccactacaacaacaacaacaactacaaaaaaaacaacctttTGTGATGCTGTAAATACTTTTTTCACAAATAAAGAATGGATAAAATCTCGTTTTTTGCTTGGCTCTCGCTGTCACAGCCTGTAGGACTGCTGAATGCTCGACTCAATAGTTATTCGTGCCTCCTTAATTTTCACTCTTAAAAATGAAGCTTCTTAGCATGAAACGTCCGAATCCAGTGTTTTAGACATGCGCTAGAAGGGTAAGTGTGCTTATTGTTCATAGGGTTTGTGAATTTCAGCATTAAGTGCGTAAATGGGGAATGAGAACGGTAAGAAGGTTGTGATTTGGTCTTGTTTTTGTAGCATTTTGTACCACTTTTTGCATGAATCTCTTTGTATTAACGTTTGTTTTAGCCACATGAGGACACACAGGGCAACATCTATCAAGTTCAATCGAATCACAATTTGAGAAAtctctatttaaaaactaaacatcGTAAGCAGGCCAAATCGTGTTACAAACATGTGCTTACATAATAAAAGCTTGATAAATGTGGCTCGTGTTTAGTGAAACTCCTCTAAAGCAGAGTATTGTGAAGTTTAAAACACCAGtgagtaactttaaaaaaaagcatcgCTTGGCTTTTTTGTCATCTCGTTTTATCCGTACTGATACTTCAGGAAAGCTATGATGACTGCCAACTCTGTAAGTGCCACCAATTGTGACCAAAATCATGGACACCTATTGACTAAAGCTCAGAGGTTGAACCCTCGGTCAAGGGCTCGACTTTGGTGATGTAAAAATCCTCTTGTGGAAGCATGTGTTGTTCGTTCTGTGTCTGTAGATCTTGGTCTTTATGACAGCATGTGAGATTTACATCGTGCCTGTTCTCCGTGACCTCTGTAGTGATGTGTAGTAAAACAGAAACCTTGTAGTGTGTAGTTATATGgccgtgtttgtgtttgtatctgACCGAATGATATTTcaaaataaacttgatttaatacACA
>TCONS_00021456
CGGATCGTGCGGTATTGATGAGCGATTGGTGATCTGTCAGGATGTCGCTGTACGCTTCTCAGATTAAAGCGTTTAAAGGCTCCGAGCCCAAAACACTTGGTGCTATTGAGATCATCATTGGTGTTTTGACTGTCATTTTGAGCACAATCGTGTACAAGCTGCACTATCATATCCAGCGGGAGATCATCATCCTCATTGTGAATGGCGCTCagCTCCTCATTACTGGTATTCTCCTGGTGCACACTGGGAGGAAGCCGTCCAAATGTCTGGTGCTGACGACCATTGTTCTGCAGTTACTAACAGCAGCATTTGATATTGTTGGATTTGGGCTCATGGCCAGACACATCCCATTCAGAGGAGAGTCATACTACTACAGGGACACCGAGTGGTGTTGTGACCCACTTCACTCTGTTTGGGCTTGCTGTGGAGAAGGAGAGAAAGGGGGACACAAAGAGTTCTTAGTGAACGGGATCTTGGGGACGCTGATCGGTTGCCTGGTGTTAGCATGTATCATTGGTTTGGTTGTGTCTCTGTTTGGGGTCTACGCTCTTTCTGTTAGTGCCATTAAGGAGCTGACCCCCATCCCTCACTCCACAGCAAACCAACATTACGGTGTTATTGTTCAGTCCCAGAACGCAATCCATGCTGGGAACTGACACACTGAGAGACGTTCAGAGCAGAAGGGTGCAGTTTTAGCACACTTTTACACCAACTGCAAAAGAGGACTGTTTCACCTAAAAACCACTCACAGGTAAACAACCaccactacaacaacaacaacaactacaaaaaaaacaacctttTGTGATGCTGTAAATACTTTTTTCACAAATAAAGAATGGATAAAATCTCGTTTTTTGCTTGGCTCTCGCTGTCACAGCCTGTAGGACTGCTGAATGCTCGACTCAATAGTTATTCGTGCCTCCTTAATTTTCACTCTTAAAAATGAAGCTTCTTAGCATGAAACGTCCGAATCCAGTGTTTTAGACATGCGCTAGAAGGGTAAGTGTGCTTATTGTTCATAGGGTTTGTGAATTTCAGCATTAAGTGCGTAAATGGGGAATGAG
>TCONS_00021457
GCGGATCGTGCGGTATTGATGAGCGATTGGTGATCTGTCAGGATGTCGCTGTACGCTTCTCAGATTAAAGCGTTTAAAGGCTCCGAGCCCAAAACACTTGGTGCTATTGAGATCATCATTGGTGTTTTGACTGTCATTTTGAGCACAATCGTGTACAAGCTGCACTATCATATCCAGCGGGAGATCATCATCCTCATTGTGAATGGCGCTCagCTCCTCATTACTGGTATTCTCCTGGTGCACACTGGGAGGAAGCCGTCCAAATGTCTGGTGCTGACGACCATTGTTCTGCAGTTACTAACAGCAGCATTTGATATTGTTGGATTTGGGCTCATGGCCAGACACATCCCATTCAGAGGAGAGTCATACTACTACAGGGACACCGAGTTCTTAGTGAACGGGATCTTGGGGACGCTGATCGGTTGCCTGGTGTTAGCATGTATCATTGGTTTGGTTGTGTCTCTGTTTGGGGTCTACGCTCTTTCTGTTAGTGCCATTAAGGAGCTGACCCCCATCCCTCACTCCACAGCAAACCAACATTACGGTGTTATTGTTCAGTCCCAGAACGCAATCCATGCTGGGAACTGACACACTGAGAGACGTTCAGAGCAGAAGGGTGCAGTTTTAGCACACTTTTACACCAACTGCAAAAGAGGACTGTTTCACCTAAAAACCACTCACAGGTAAACAACCaccactacaacaacaacaacaactacaaaaaaaacaacctttTGTGATGCTGTAAATACTTTTTTCACAAATAAAGAATGGATAAAATCTCGTTTTTTGCTTGGCTCTCGCTGTCACAGCCTGTAGGACTGCTGAATGCTCGACTCAATAGTTATTCGTGCCTCCTTAATTTTCACTCTTAAAAATGAAGCTTCTTAGCATGAAACGTCCGAATCCAGTGTTTTAGACATGCGCTAGAAGGGTAAGTGTGCTTATTGTTCATAGGGTTTGTGAATTTCAGCATTAAGTGCGTAAATGGGGAATGAG
>TCONS_00021458
GTTTCTCCAAGCGCGCGCGCTTGACTCAGCTCTCTTTCCCTCTTCATAATTAATAACCGGGTTAAAAATACCCGGCGCGTGCAGTGCTGGTTCTGTAGAAAGAGAGCGGCTGGTTTGAGTTGAGTTGTGTTCGGGACGGAGCCAACCTGGATTTCTCCTTGTTTAGTCGCCTCCTCCTCCCTTCATGACATCAACACTGCGGAGGGAGCCGCCGCGGCGCGCGCTCTGCTGCAGAACAACGCCAGTGCGCAAAGCGGATCGTGCGGTATTGATGAGCGATTGGTGATCTGTCAGGATGTCGCTGTACGCTTCTCAGATTAAAGCGTTTAAAGGCTCCGAGCCCAAAACACTTGGTGCTATTGAGATCATCATTGGTGTTTTGACTGTCATTTTGAGCACAATCGTGTACAAGCTGCACTATCATATCCAGCGGGAGATCATCATCCTCATTGTGAATGGCGCTCagCTCCTCATTACTGGTATTCTCCTGGTGCACACTGGGAGGAAGCCGTCCAAATGTCTGGTGCTGACGACCATTGTTCTGCAGTTACTAACAGCAGCATTTGATATTGTTGGATTTGGGCTCATGGCCAGACACATCCCATTCAGAGGAGAGTCATACTACTACAGGGACACCGAGTTCTTAGTGAACGGGATCTTGGGGACGCTGATCGGTTGCCTGGTGTTAGCATGTATCATTGGTTTGGTTGTGTCTCTGTTTGGGGTCTACGCTCTTTCTGTTAGTGCCATTAAGGAGCTGACCCCCATCCCTCACTCCACAGCAAACCAACATTACGGTGTTATTGTTCAGTCCCAGAACGCAATCCATGCTGGGAACTGACACACTGAGAGACGTTCAGAGCAGAAGGGTGCAGTTTTAGCACACTTTTACACCAACTGCAAAAGAGGACTGTTTCACCTAAAAACCACTCACAGGTAAACAACCaccactacaacaacaacaacaactacaaaaaaaacaacctttTGTGATGCTGTAAATACTTTTTTCACAAATAAAGAATGGATAAAATCTCGTTTTTTGCTTGGCTCTCGCTGTCACAGCCTGTAGGACTGCTGAATGCTCGACTCAATAGTTATTCGTGCCTCCTTAATTTTCACTCTTAAAAATGAAGCTTCTTAGCATGAAACGTCCGAATCCAGTGTTTTAGACATGCGCTAGAAGGGTAAGTGTGCTTATTGTTCATAGGGTTTGTGAATTTCAGCATTAAGTGCGTAAATGGGGAATGAG
>TCONS_00021459
AGCGGATCGTGCGGTATTGATGAGCGATTGGTGATCTGTCAGGATGTCGCTGTACGCTTCTCAGATTAAAGCGTTTAAAGGCTCCGAGCCCAAAACACTTGGTGCTATTGAGATCATCATTGGTGTTTTGACTGTCATTTTGAGCACAATCGTGTACAAGCTGCACTATCATATCCAGCGGGAGATCATCATCCTCATTGTGAATGGCGCTCagCTCCTCATTACTGGTATTCTCCTGGTGCACACTGGGAGGAAGCCGTCCAAATGTCTGGTATGAACAAATGCTTTTATTAAAGCAATCACACATATCGTGATACTGTCAGTCTGGCGCACCTAATTAAAGCTCTTTAAGGTCTTCCGTCAGAAAGGACACTTTGCCCCCGTCCCGTATTGACCAAATTAGTTGCAGCCTCAGCAACAGTATTCTTGTCAAACTTCTGACCACAAAGGTCCTCTTTGCATATTGTTTTGGCCAAGAACTGTCTACTTAGATGACAAGACATTATTTAACCCAAATGTAAGTGACCAGCAcgatttctgttttattttagtgAACGGTGTTATTTTAATGTCACTAAGAAACTGTGTTGATTTTTAttaatagtcattcattcattcattcattcattttcctttggcttagtcccttatttatcaggagtcaccacagcgtaatgcaCCGCCAGCTATTctggcatgttttatgcagtggatgctcgttcagctgcaacccagtactgggaaacacccatacactttcacattcacacacactcatac

Function

symbol description
si:dkey-7j14.5 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8110 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000097528

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021455 False 2007 mRNA 0.44 8 43014417 43026273
TCONS_00021456 False 1067 mRNA 0.45 7 43015103 43025885
TCONS_00021457 False 999 mRNA 0.45 6 43015103 43025886
TCONS_00021458 False 1252 mRNA 0.47 7 43015103 43026273
TCONS_00021459 True 780 lncRNA 0.43 3 43022580 43025887

Neighbor

gene id symbol gene type direction distance location
XLOC_010977 nudt17 coding downstream 2916 43000828 ~ 43011501 (-)
XLOC_010976 NA coding downstream 20525 42974547 ~ 42993892 (-)
XLOC_010975 NA coding downstream 39877 42973085 ~ 42974540 (-)
XLOC_010974 si:ch211-135n15.3 coding downstream 44819 42968097 ~ 42969598 (-)
XLOC_010973 mtx1a coding downstream 49225 42938859 ~ 42965192 (-)
XLOC_010979 si:dkey-7j14.6 coding upstream 1806 43028079 ~ 43041450 (-)
XLOC_010980 sema4aa coding upstream 21699 43047972 ~ 43065164 (-)
XLOC_010981 NA coding upstream 92840 43119113 ~ 43124227 (-)
XLOC_010982 slc25a40 coding upstream 99979 43126252 ~ 43139257 (-)
XLOC_010983 cldn12 coding upstream 201451 43227724 ~ 43233509 (-)
XLOC_010626 CR392024.2 misc downstream 22119242 20895112 ~ 20895175 (-)
XLOC_010970 CR854827.1 non-coding downstream 139708 42873740 ~ 42874709 (-)
XLOC_010954 BX649388.1 non-coding downstream 1049108 41955855 ~ 41965309 (-)
XLOC_010953 BX649388.3 non-coding downstream 1065301 41948075 ~ 41949116 (-)
XLOC_010987 NA non-coding upstream 332652 43358925 ~ 43368871 (-)
XLOC_010988 oxr1a non-coding upstream 391359 43417632 ~ 43742343 (-)
XLOC_010989 LO018541.1 non-coding upstream 529191 43555464 ~ 43555579 (-)
XLOC_010992 NA non-coding upstream 1128211 44154484 ~ 44159865 (-)

Expression


Co-expression Network